Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GE022_RS02540 Genome accession   NZ_CP053790
Coordinates   500608..502269 (+) Length   553 a.a.
NCBI ID   WP_164405408.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 495608..507269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS02510 (GE022_002495) - 495909..496757 (+) 849 WP_164405414.1 NAD(P)H-hydrate dehydratase -
  GE022_RS02515 (GE022_002500) xseA 496907..498247 (+) 1341 WP_164405413.1 exodeoxyribonuclease VII large subunit -
  GE022_RS02520 (GE022_002505) - 498225..498440 (+) 216 WP_164405412.1 exodeoxyribonuclease VII small subunit -
  GE022_RS02525 (GE022_002510) - 498440..499312 (+) 873 WP_164405411.1 polyprenyl synthetase family protein -
  GE022_RS02530 (GE022_002515) - 499305..500132 (+) 828 WP_164405410.1 TlyA family RNA methyltransferase -
  GE022_RS02535 (GE022_002520) - 500119..500589 (+) 471 WP_164405409.1 arginine repressor -
  GE022_RS02540 (GE022_002525) recN 500608..502269 (+) 1662 WP_164405408.1 DNA repair protein RecN Machinery gene
  GE022_RS02545 (GE022_002530) - 502467..503399 (+) 933 WP_164405407.1 LPXTG cell wall anchor domain-containing protein -
  GE022_RS02550 (GE022_002535) - 503640..504479 (+) 840 WP_164227806.1 DegV family protein -
  GE022_RS02555 (GE022_002540) - 504472..505314 (+) 843 WP_164405406.1 SGNH/GDSL hydrolase family protein -
  GE022_RS02560 (GE022_002545) - 505292..505879 (+) 588 WP_164405405.1 YpmS family protein -
  GE022_RS02565 (GE022_002550) - 505978..506253 (+) 276 WP_003044261.1 HU family DNA-binding protein -
  GE022_RS10890 (GE022_002555) - 506320..506568 (-) 249 Protein_450 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62385.74 Da        Isoelectric Point: 4.6733

>NTDB_id=394495 GE022_RS02540 WP_164405408.1 500608..502269(+) (recN) [Streptococcus canis strain HL_77_2]
MLLEISIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNMMLGARASTEVIRHGANKAEIEGFFSVDANPALAACL
EASGIAMEEDLIIRRDIFANGRSVSRINGQMVNLATLKQIGQFLVDIHDQHDQEELMRPQLHQHILDTFGDKAFGQLKEA
YQLIFDRYKNLRKQVLDKQRNEKEHKERLDMLAFQMAEIEAAALSRGEDERLYQERDRLLNHKKIADTLTNAYVMLDNDD
FSSLSNIRSSMNDLLSIEQFAPDYKAMSTTISEAYYILEEVSKQLSDTIDQLDFDGDRLQEIEFRLDTLNSLTRKYGGDV
TDVLDYYDNIVKEYQLLTGDDRSSGDLESELKVLEKQLVAAATDLSEYRHQLANRLEADIKAELRELYMEKADFKVQFTK
SKFNREGNENLEFYISTNPGEGFKPLVKVASGGELSRLMLAIKAAISKKEDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
CHGQVLAISHLPQVIAIADYQYFISKESKEESTVSKVRLLTSEERVEEIAKMIAGADLTEAALTQARELLVKH

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=394495 GE022_RS02540 WP_164405408.1 500608..502269(+) (recN) [Streptococcus canis strain HL_77_2]
ATGTTATTAGAAATTTCCATTAAAAATTTTGCTATTATTGAGGAAATCTCCCTGAATTTTGAAAATGGTATGACAGTTTT
AACGGGGGAAACAGGGGCTGGGAAATCCATCATTATTGATGCCATGAATATGATGTTGGGAGCACGTGCCAGCACAGAGG
TTATTCGTCATGGAGCTAATAAAGCAGAAATTGAAGGCTTTTTTTCCGTAGATGCCAATCCAGCTCTTGCTGCTTGTTTG
GAAGCATCTGGAATTGCTATGGAAGAGGATTTGATTATTCGCCGCGATATTTTTGCCAATGGTAGAAGCGTCAGCCGTAT
TAATGGTCAAATGGTTAATCTGGCAACTTTGAAGCAGATTGGTCAATTTTTGGTGGATATTCACGATCAACATGACCAAG
AAGAATTAATGCGACCACAATTACACCAGCATATCTTGGATACCTTTGGTGACAAAGCTTTTGGACAATTGAAAGAGGCT
TACCAGCTTATTTTTGACCGCTACAAGAACTTGCGCAAGCAGGTTCTTGACAAGCAAAGAAATGAAAAGGAACACAAAGA
GCGTCTTGATATGTTGGCTTTTCAGATGGCAGAAATTGAGGCTGCTGCCTTGAGTCGAGGTGAAGACGAGCGGTTATATC
AAGAGCGTGACCGCTTATTGAACCATAAAAAAATTGCCGATACCTTGACCAACGCTTATGTCATGTTAGATAATGACGAT
TTTTCAAGCCTATCCAATATTCGTTCTAGCATGAATGACTTGCTGTCTATTGAGCAGTTTGCCCCTGACTATAAAGCCAT
GTCAACCACAATTTCGGAAGCTTATTACATTTTGGAAGAAGTCAGTAAGCAGTTGTCTGATACCATTGATCAACTGGACT
TTGATGGTGATCGCTTGCAAGAAATCGAATTCCGCTTGGATACCCTTAATAGTTTGACCCGTAAATATGGCGGGGATGTT
ACTGATGTTCTGGACTATTATGACAATATTGTCAAAGAATATCAACTATTAACAGGAGATGACCGTTCCTCAGGGGATTT
AGAATCCGAATTAAAGGTTTTGGAAAAACAATTGGTAGCTGCAGCTACTGATTTGAGTGAGTATCGCCACCAACTGGCAA
ATCGGTTAGAAGCTGATATTAAAGCCGAACTTAGGGAACTTTACATGGAAAAAGCTGATTTTAAAGTGCAGTTTACTAAA
TCAAAGTTTAACCGTGAAGGTAATGAAAACCTAGAGTTCTATATTTCAACTAACCCAGGTGAAGGCTTCAAGCCACTGGT
TAAAGTCGCTTCTGGGGGTGAACTATCTCGTTTGATGTTGGCCATCAAGGCTGCTATCTCTAAAAAAGAAGATAAAACCA
GTATTGTTTTTGACGAGGTGGATACGGGTGTTTCTGGCCGTGTCGCTCAAGCGATTGCCCAGAAAATTTATAAAATTGGC
TGTCATGGGCAAGTCCTTGCTATTTCTCATTTGCCACAGGTCATTGCCATAGCGGATTATCAGTATTTTATTTCTAAAGA
AAGCAAAGAGGAATCAACCGTTTCTAAGGTCAGATTATTGACGTCAGAAGAACGTGTTGAGGAAATTGCTAAAATGATTG
CTGGTGCAGATCTGACAGAAGCAGCCCTTACTCAGGCGCGTGAACTGCTTGTCAAACATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.563

100

0.447

Multiple sequence alignment