Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GE022_RS00295 Genome accession   NZ_CP053790
Coordinates   36913..37677 (+) Length   254 a.a.
NCBI ID   WP_159305971.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31913..42677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS00275 (GE022_000275) mreC 32871..33689 (+) 819 WP_164405054.1 rod shape-determining protein MreC -
  GE022_RS10940 (GE022_000280) mreD 33689..34189 (+) 501 WP_164405053.1 rod shape-determining protein MreD -
  GE022_RS00285 (GE022_000285) pcsB 34285..35514 (+) 1230 WP_125074326.1 peptidoglycan hydrolase PcsB -
  GE022_RS00290 (GE022_000290) - 35733..36695 (+) 963 WP_003045875.1 ribose-phosphate diphosphokinase -
  GE022_RS00295 (GE022_000295) recO 36913..37677 (+) 765 WP_159305971.1 DNA repair protein RecO Machinery gene
  GE022_RS00300 (GE022_000300) plsX 37787..38794 (+) 1008 WP_164229056.1 phosphate acyltransferase PlsX -
  GE022_RS00305 (GE022_000305) - 38787..39029 (+) 243 WP_003045880.1 phosphopantetheine-binding protein -
  GE022_RS00310 (GE022_000310) purC 39189..39899 (+) 711 WP_003045984.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 30015.25 Da        Isoelectric Point: 5.7844

>NTDB_id=394469 GE022_RS00295 WP_159305971.1 36913..37677(+) (recO) [Streptococcus canis strain HL_77_2]
MQLNESLGIVLFNRNYREDDKLVKIFTETAGKRMFFVKHISRSKLASVVQPLTVADFIFKLNESGLSYIDDYNQVDTYRY
INEDLFRLSYASYVVALADAAISDNEPDPHLFAFLKKTLDLMEEGLDYEILTNIFEVQVLERFGISINFHDCAFCHRVGL
PFDFSHQYSGVLCPEHYHKDERRNHLDPNVIYLLDRFQTIQFEELRTISLKDDMKRKLRHFIDELYHDYVGLQLKSKIFI
DDLSKWGNIMKQKD

Nucleotide


Download         Length: 765 bp        

>NTDB_id=394469 GE022_RS00295 WP_159305971.1 36913..37677(+) (recO) [Streptococcus canis strain HL_77_2]
ATGCAGTTAAACGAGTCTTTGGGGATTGTCCTTTTTAATAGGAATTATCGGGAAGATGATAAATTGGTCAAGATTTTTAC
GGAGACGGCTGGGAAACGCATGTTTTTCGTAAAACATATTAGTCGTTCTAAACTTGCTTCGGTGGTTCAGCCCTTGACGG
TTGCTGACTTTATCTTTAAGTTAAATGAGTCAGGTCTTTCCTACATTGATGATTATAATCAGGTGGATACTTATCGGTAC
ATTAATGAAGATCTCTTTCGACTATCTTATGCAAGCTATGTGGTGGCTTTGGCAGATGCTGCTATTTCGGACAATGAACC
TGATCCTCATTTATTTGCTTTTTTGAAAAAGACCCTTGATTTGATGGAAGAGGGGTTAGATTATGAGATTTTAACCAATA
TTTTTGAAGTACAAGTGTTAGAACGGTTTGGAATTAGCATTAATTTTCATGACTGTGCTTTTTGTCATCGTGTGGGTCTG
CCATTTGATTTTTCACATCAGTATTCAGGAGTGCTTTGTCCAGAACATTATCATAAAGATGAACGTCGTAATCATCTAGA
TCCCAATGTGATTTATTTATTAGATCGTTTTCAAACCATTCAGTTTGAGGAGTTAAGGACCATTTCTTTGAAGGATGATA
TGAAAAGAAAGCTTCGTCATTTTATTGATGAATTGTATCACGATTATGTAGGGCTTCAGTTGAAAAGCAAGATCTTTATT
GACGATTTGAGTAAATGGGGTAACATTATGAAACAAAAGGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.306

97.638

0.618