Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GE023_RS08230 Genome accession   NZ_CP053789
Coordinates   1654914..1655522 (+) Length   202 a.a.
NCBI ID   WP_003044766.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1649914..1660522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS08200 (GE023_008195) - 1650137..1650619 (+) 483 WP_093998972.1 S-ribosylhomocysteine lyase -
  GE023_RS08205 (GE023_008200) - 1650778..1652256 (-) 1479 WP_164401789.1 cell division site-positioning protein MapZ family protein -
  GE023_RS08210 (GE023_008205) - 1652270..1653424 (-) 1155 WP_159305984.1 class I SAM-dependent RNA methyltransferase -
  GE023_RS08220 (GE023_008215) gpsB 1653869..1654195 (-) 327 WP_003044762.1 cell division regulator GpsB -
  GE023_RS08225 (GE023_008220) - 1654317..1654832 (-) 516 WP_003044763.1 DUF1273 domain-containing protein -
  GE023_RS08230 (GE023_008225) recU 1654914..1655522 (+) 609 WP_003044766.1 Holliday junction resolvase RecU Machinery gene
  GE023_RS08235 (GE023_008230) pbp1a 1655509..1657677 (+) 2169 WP_093998969.1 penicillin-binding protein PBP1A -
  GE023_RS08240 (GE023_008235) pepC 1657733..1659064 (-) 1332 WP_003044773.1 aminopeptidase C -
  GE023_RS08245 (GE023_008240) nadE 1659241..1660065 (-) 825 WP_003044779.1 ammonia-dependent NAD(+) synthetase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23527.03 Da        Isoelectric Point: 9.5636

>NTDB_id=394438 GE023_RS08230 WP_003044766.1 1654914..1655522(+) (recU) [Streptococcus canis strain HL_98_2]
MVNYPHNLIRQKPNSVQKRSKQNKVDFANRGMSFEATINATNDYYLSQQIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGHYIDFEAKETRQKTAMPMKNFHLHQIEHMVAVLEQQGICFVLLHFSTLKETYYLPAKALIDFYQID
HGNKSMPLDYIRKHGFEIVMGAFPQVPYLDIIEQNFLGGDYN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=394438 GE023_RS08230 WP_003044766.1 1654914..1655522(+) (recU) [Streptococcus canis strain HL_98_2]
ATGGTCAACTACCCTCATAATCTTATTCGGCAAAAACCAAATTCTGTTCAAAAGCGATCAAAACAAAATAAGGTGGATTT
TGCTAACCGAGGCATGTCCTTTGAAGCAACTATCAATGCGACAAACGATTATTATTTGTCACAGCAAATAGCTGTTATTC
ATAAAAAACCTACCCCTATCCAAATTGTTAAGGTAGACTACCCTAAGCGTAGTCGTGCTAAGATTGTAGAAGCTTACTTT
AGACAGGCTTCCACAACTGACTATTCTGGTGTTTACAAGGGGCATTATATTGATTTTGAAGCCAAGGAAACCAGACAAAA
AACAGCCATGCCCATGAAAAACTTTCATCTTCATCAGATTGAACACATGGTAGCTGTTTTGGAGCAACAAGGAATTTGTT
TTGTCCTTCTTCACTTTTCGACCCTCAAGGAAACCTACTATTTACCTGCTAAAGCACTGATTGATTTTTATCAAATCGAT
CACGGGAACAAATCCATGCCCCTCGATTATATCAGAAAACATGGCTTTGAGATAGTGATGGGAGCATTTCCTCAGGTCCC
TTACTTAGACATAATAGAACAAAATTTTTTAGGCGGTGATTACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

50.761

97.525

0.495