Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | GE023_RS06225 | Genome accession | NZ_CP053789 |
| Coordinates | 1245350..1246459 (-) | Length | 369 a.a. |
| NCBI ID | WP_003047995.1 | Uniprot ID | A0A2D4DP26 |
| Organism | Streptococcus canis strain HL_98_2 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1240350..1251459
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE023_RS06200 (GE023_006195) | - | 1240737..1241543 (-) | 807 | WP_159305092.1 | ABC transporter permease | - |
| GE023_RS06205 (GE023_006200) | - | 1241540..1242478 (-) | 939 | WP_003047999.1 | glycosyltransferase family 2 protein | - |
| GE023_RS06210 (GE023_006205) | cps2T | 1242475..1243623 (-) | 1149 | WP_159305093.1 | beta 1-4 rhamnosyltransferase Cps2T | - |
| GE023_RS06215 (GE023_006210) | rfbD | 1243742..1244596 (-) | 855 | WP_003047997.1 | dTDP-4-dehydrorhamnose reductase | - |
| GE023_RS06220 (GE023_006215) | - | 1244734..1245072 (-) | 339 | WP_003047996.1 | metal-sulfur cluster assembly factor | - |
| GE023_RS06225 (GE023_006220) | rpoS | 1245350..1246459 (-) | 1110 | WP_003047995.1 | RNA polymerase sigma factor RpoD | Regulator |
| GE023_RS06230 (GE023_006225) | dnaG | 1246468..1248282 (-) | 1815 | WP_099983056.1 | DNA primase | - |
| GE023_RS06235 (GE023_006230) | mscL | 1248409..1248783 (+) | 375 | WP_003047993.1 | large conductance mechanosensitive channel protein MscL | - |
| GE023_RS06240 (GE023_006235) | rpsU | 1249102..1249278 (-) | 177 | WP_000048058.1 | 30S ribosomal protein S21 | - |
| GE023_RS06245 (GE023_006240) | - | 1249380..1250192 (-) | 813 | WP_003047942.1 | transporter substrate-binding domain-containing protein | - |
| GE023_RS06250 (GE023_006245) | - | 1250260..1251375 (-) | 1116 | WP_003047939.1 | aminotransferase | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 42216.99 Da Isoelectric Point: 4.5491
>NTDB_id=394417 GE023_RS06225 WP_003047995.1 1245350..1246459(-) (rpoS) [Streptococcus canis strain HL_98_2]
MTKEKEITTFNVQVAEFIRHHKKEGTAIDDDVTETLVIPFALDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEELIGSNSAKVNDPVRMYLKEIGVVPLLTSEEEKVLAVAVAEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFMED
MTKEKEITTFNVQVAEFIRHHKKEGTAIDDDVTETLVIPFALDADQIDDLLERLTDGGISITDKEGNPSSKYVVEEPKPE
ELTDEELIGSNSAKVNDPVRMYLKEIGVVPLLTSEEEKVLAVAVAEGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYSKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMEMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKQLRDFMED
Nucleotide
Download Length: 1110 bp
>NTDB_id=394417 GE023_RS06225 WP_003047995.1 1245350..1246459(-) (rpoS) [Streptococcus canis strain HL_98_2]
ATGACAAAAGAAAAAGAAATTACAACTTTTAATGTTCAAGTTGCGGAGTTTATTCGTCATCATAAAAAAGAAGGAACAGC
GATTGATGATGACGTGACTGAAACACTCGTCATTCCATTTGCCTTGGACGCTGATCAAATCGACGACCTACTTGAGCGGC
TAACAGATGGTGGCATTTCCATTACAGATAAGGAGGGCAACCCTTCATCAAAATACGTGGTTGAAGAACCTAAACCCGAA
GAGCTCACTGATGAGGAATTAATTGGAAGCAATTCTGCTAAGGTAAATGACCCTGTCCGTATGTACCTCAAAGAAATCGG
TGTCGTACCACTTCTGACAAGTGAAGAAGAAAAGGTATTGGCGGTTGCTGTAGCAGAAGGTGATCTAGAAGCTAAACAAC
GTTTAGCAGAAGCCAACTTGCGTCTGGTAGTCTCTATTGCTAAACGTTATGTCGGTCGCGGCATGCAATTCTTGGATTTG
ATTCAAGAAGGCAATATGGGGTTGATGAAAGCTGTTGATAAATTTGACTATTCCAAAGGGTTTAAGTTTTCAACCTACGC
TACATGGTGGATTCGCCAAGCCATTACTCGTGCTATTGCTGACCAAGCACGTACCATTCGTATCCCAGTTCACATGGTAG
AAACCATTAACAAATTGGTTCGTGAGCAACGTAATTTATTGCAGGAATTAGGACAAGATCCAACACCAGAACAAATTGCA
GAACGCATGGAAATGACACCTGATAAGGTTCGTGAAATTTTGAAAATTGCTCAAGAGCCAGTCTCTCTAGAAACCCCAAT
TGGTGAAGAAGATGATAGCCACTTGGGTGATTTTATCGAAGATGAAGTCATTGAAAATCCAGTTGACTACACAACACGCG
TGGTTCTTCGTGAACAGTTGGATGAGGTCTTGGACACATTAACAGACCGTGAGGAAAATGTTCTCCGCCTACGTTTTGGA
CTTGACGATGGTAAAATGCGTACCCTTGAAGATGTGGGCAAAGTCTTTAACGTCACCCGTGAACGTATCCGTCAAATTGA
AGCTAAGGCACTTCGCAAACTTCGCCACCCAAGCCGCAGTAAGCAATTAAGAGATTTTATGGAGGACTAA
ATGACAAAAGAAAAAGAAATTACAACTTTTAATGTTCAAGTTGCGGAGTTTATTCGTCATCATAAAAAAGAAGGAACAGC
GATTGATGATGACGTGACTGAAACACTCGTCATTCCATTTGCCTTGGACGCTGATCAAATCGACGACCTACTTGAGCGGC
TAACAGATGGTGGCATTTCCATTACAGATAAGGAGGGCAACCCTTCATCAAAATACGTGGTTGAAGAACCTAAACCCGAA
GAGCTCACTGATGAGGAATTAATTGGAAGCAATTCTGCTAAGGTAAATGACCCTGTCCGTATGTACCTCAAAGAAATCGG
TGTCGTACCACTTCTGACAAGTGAAGAAGAAAAGGTATTGGCGGTTGCTGTAGCAGAAGGTGATCTAGAAGCTAAACAAC
GTTTAGCAGAAGCCAACTTGCGTCTGGTAGTCTCTATTGCTAAACGTTATGTCGGTCGCGGCATGCAATTCTTGGATTTG
ATTCAAGAAGGCAATATGGGGTTGATGAAAGCTGTTGATAAATTTGACTATTCCAAAGGGTTTAAGTTTTCAACCTACGC
TACATGGTGGATTCGCCAAGCCATTACTCGTGCTATTGCTGACCAAGCACGTACCATTCGTATCCCAGTTCACATGGTAG
AAACCATTAACAAATTGGTTCGTGAGCAACGTAATTTATTGCAGGAATTAGGACAAGATCCAACACCAGAACAAATTGCA
GAACGCATGGAAATGACACCTGATAAGGTTCGTGAAATTTTGAAAATTGCTCAAGAGCCAGTCTCTCTAGAAACCCCAAT
TGGTGAAGAAGATGATAGCCACTTGGGTGATTTTATCGAAGATGAAGTCATTGAAAATCCAGTTGACTACACAACACGCG
TGGTTCTTCGTGAACAGTTGGATGAGGTCTTGGACACATTAACAGACCGTGAGGAAAATGTTCTCCGCCTACGTTTTGGA
CTTGACGATGGTAAAATGCGTACCCTTGAAGATGTGGGCAAAGTCTTTAACGTCACCCGTGAACGTATCCGTCAAATTGA
AGCTAAGGCACTTCGCAAACTTCGCCACCCAAGCCGCAGTAAGCAATTAAGAGATTTTATGGAGGACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.578 |
79.675 |
0.363 |