Detailed information NTG0394333

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HQN81_RS17220
• Genome accession: NZ_CP053787
• Coordinates: 3561442..3562434 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate J31
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3556442..3567434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQN81_RS17200 (HQN81_17205)	otnK	3557217..3558479 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
HQN81_RS17205 (HQN81_17210)	ygbL	3558476..3559114 (+)	639	WP_001278994.1	aldolase	-
HQN81_RS17210 (HQN81_17215)	ygbM	3559119..3559895 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
HQN81_RS17215 (HQN81_17220)	ygbN	3559984..3561348 (+)	1365	WP_000104441.1	GntP family transporter	-
HQN81_RS17220 (HQN81_17225)	rpoS	3561442..3562434 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HQN81_RS17225 (HQN81_17230)	nlpD	3562497..3563591 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HQN81_RS17230 (HQN81_17235)	pcm	3563776..3564402 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HQN81_RS17235 (HQN81_17240)	surE	3564396..3565157 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HQN81_RS17240 (HQN81_17245)	truD	3565138..3566187 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
HQN81_RS17245 (HQN81_17250)	ispF	3566184..3566663 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HQN81_RS17250 (HQN81_17255)	ispD	3566663..3567373 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=394333 HQN81_RS17220 WP_000081550.1 3561442..3562434(-) (rpoS) [Escherichia coli isolate J31]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=394333 HQN81_RS17220 WP_000081550.1 3561442..3562434(-) (rpoS) [Escherichia coli isolate J31]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715