Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   STND_RS07990 Genome accession   NC_017563
Coordinates   1522037..1522768 (+) Length   243 a.a.
NCBI ID   WP_002948869.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1517037..1527768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS10485 - 1517174..1518744 (+) 1571 WP_087009847.1 IS3-like element ISSth1b family transposase -
  STND_RS07960 (STND_1615) - 1518890..1519144 (-) 255 WP_014608660.1 Blp family class II bacteriocin -
  STND_RS12065 - 1519395..1519796 (-) 402 WP_024703992.1 hypothetical protein -
  STND_RS07975 (STND_1618) - 1520801..1521031 (-) 231 WP_014608662.1 bacteriocin class II family protein -
  STND_RS07980 (STND_1619) - 1521387..1521587 (-) 201 WP_011681569.1 hypothetical protein -
  STND_RS07985 (STND_1620) - 1521606..1521782 (-) 177 WP_011681570.1 Blp family class II bacteriocin -
  STND_RS07990 (STND_1621) comE/blpR 1522037..1522768 (+) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor Regulator
  STND_RS11775 - 1523305..1524108 (+) 804 WP_224102945.1 ATP-binding protein -
  STND_RS08000 (STND_1623) - 1524126..1524287 (-) 162 WP_011681573.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  STND_RS08005 (STND_1624) comB 1524302..1525669 (-) 1368 WP_011681574.1 bacteriocin secretion accessory protein Regulator

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27803.11 Da        Isoelectric Point: 6.9136

>NTDB_id=39422 STND_RS07990 WP_002948869.1 1522037..1522768(+) (comE/blpR) [Streptococcus thermophilus ND03]
MKIYLLEDNSIQMGRLEEAVAHELKSFGKDLSCVQSFDKPDQLLSAITSNTSDQIFFLDIEIKGEDKKGLDIAKIIRQNN
PYAIIAFVTTHIEFMPQAFGVTAYKYINKTLDEASFRKEIGETIAQVFPINATTTDEFFLYKTESQLINLPMDQILYLST
SDIKHHVHLQTIHTLMDIRANLADFKKIHKKLYPCHRSYIVNTDMIISVNKTNYEATLINGQVLPVSRMKIGKIAQIVEE
RGR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=39422 STND_RS07990 WP_002948869.1 1522037..1522768(+) (comE/blpR) [Streptococcus thermophilus ND03]
TTGAAGATTTACCTATTAGAAGATAATTCTATTCAGATGGGTCGCTTGGAAGAGGCTGTGGCACATGAACTTAAATCCTT
CGGAAAAGATCTATCTTGTGTCCAGTCTTTTGACAAACCTGACCAGTTGTTATCAGCTATCACTTCTAATACAAGCGATC
AGATTTTCTTTCTTGATATTGAAATTAAAGGTGAAGATAAGAAGGGACTTGATATCGCTAAAATCATACGTCAAAATAAC
CCTTATGCTATCATTGCCTTTGTCACTACACATATAGAGTTCATGCCTCAAGCTTTTGGCGTTACAGCCTATAAATACAT
CAATAAAACCTTAGATGAAGCTAGCTTTAGAAAAGAAATAGGGGAAACCATTGCTCAAGTCTTCCCTATTAACGCAACTA
CCACGGATGAGTTTTTTCTCTACAAAACAGAGTCTCAATTAATAAACCTTCCTATGGATCAAATTCTATACCTATCCACA
TCAGATATCAAACACCATGTTCACCTCCAGACTATCCATACCCTCATGGATATCCGAGCAAATCTGGCAGACTTTAAAAA
GATACACAAAAAGCTCTACCCATGCCATCGGTCCTATATCGTCAATACAGATATGATCATCTCTGTCAACAAGACCAATT
ATGAAGCTACCTTAATTAATGGTCAAGTTCTACCAGTATCCCGTATGAAGATAGGAAAGATTGCACAGATTGTTGAGGAA
AGAGGCAGATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(17-119)

LytTr DNA-binding domain (LytTR)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

35.628

100

0.362

Multiple sequence alignment