Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GEA58_RS08055 Genome accession   NZ_CP045450
Coordinates   1707354..1707980 (+) Length   208 a.a.
NCBI ID   WP_063135274.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain 14280161202     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1702354..1712980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEA58_RS08035 - 1702753..1704513 (-) 1761 WP_033487273.1 AAA family ATPase -
  GEA58_RS08040 matP 1704700..1705152 (+) 453 WP_006809347.1 macrodomain Ter protein MatP -
  GEA58_RS08045 ompA 1705218..1706270 (-) 1053 WP_017694761.1 porin OmpA -
  GEA58_RS08050 sulA 1706627..1707136 (-) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  GEA58_RS08055 sxy/tfoX 1707354..1707980 (+) 627 WP_063135274.1 TfoX/Sxy family DNA transformation protein Regulator
  GEA58_RS08060 yccS 1707937..1710099 (-) 2163 WP_015570895.1 YccS family putative transporter -
  GEA58_RS08065 - 1710118..1710564 (-) 447 WP_015570894.1 YccF domain-containing protein -
  GEA58_RS08070 helD 1710687..1712741 (+) 2055 WP_203453297.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24002.57 Da        Isoelectric Point: 9.6332

>NTDB_id=394178 GEA58_RS08055 WP_063135274.1 1707354..1707980(+) (sxy/tfoX) [Enterobacter hormaechei strain 14280161202]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRASEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=394178 GEA58_RS08055 WP_063135274.1 1707354..1707980(+) (sxy/tfoX) [Enterobacter hormaechei strain 14280161202]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTCTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAACCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.416

97.115

0.567

Multiple sequence alignment