Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GEO46_RS13950 Genome accession   NZ_CP045447
Coordinates   2815716..2816321 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2810716..2821321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEO46_RS13935 (GEO46_13935) helD 2810936..2812990 (-) 2055 WP_000420528.1 DNA helicase IV -
  GEO46_RS13940 (GEO46_13940) - 2813114..2813557 (+) 444 WP_001261221.1 YccF domain-containing protein -
  GEO46_RS13945 (GEO46_13945) yccS 2813576..2815729 (+) 2154 WP_000950870.1 YccS family putative transporter -
  GEO46_RS13950 (GEO46_13950) sxy/tfoX 2815716..2816321 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  GEO46_RS13955 (GEO46_13955) sulA 2816538..2817047 (+) 510 WP_000288732.1 SOS-induced cell division inhibitor SulA -
  GEO46_RS13960 (GEO46_13960) ompA 2817404..2818456 (+) 1053 WP_001562588.1 porin OmpA -
  GEO46_RS13965 (GEO46_13965) matP 2818528..2818980 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  GEO46_RS13970 (GEO46_13970) - 2819166..2820926 (+) 1761 WP_000156445.1 Lon protease family protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=394163 GEO46_RS13950 WP_001202375.1 2815716..2816321(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=394163 GEO46_RS13950 WP_001202375.1 2815716..2816321(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACAGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment