Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   HIBPF_RS06515 Genome accession   NC_014920
Coordinates   1288332..1288844 (-) Length   170 a.a.
NCBI ID   WP_013526183.1    Uniprot ID   -
Organism   Haemophilus influenzae F3031     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283332..1293844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIBPF_RS06500 (HIBPF13650) comQ 1286638..1286925 (-) 288 WP_041174964.1 DUF5374 domain-containing protein Machinery gene
  HIBPF_RS06505 (HIBPF13660) comP 1286918..1287601 (-) 684 WP_013526181.1 DUF2572 family protein Machinery gene
  HIBPF_RS06510 (HIBPF13670) comO 1287616..1288332 (-) 717 WP_013526182.1 type II secretion system protein J Machinery gene
  HIBPF_RS06515 (HIBPF13680) comN 1288332..1288844 (-) 513 WP_013526183.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIBPF_RS06520 (HIBPF13690) suhB 1289044..1289847 (+) 804 WP_013526184.1 inositol-1-monophosphatase -
  HIBPF_RS06525 (HIBPF13700) nrfE 1289956..1291863 (+) 1908 WP_013526185.1 heme lyase NrfEFG subunit NrfE -
  HIBPF_RS06530 (HIBPF13710) - 1291863..1292393 (+) 531 WP_013526186.1 DsbE family thiol:disulfide interchange protein -
  HIBPF_RS06535 (HIBPF13711) nrfF 1292390..1293547 (+) 1158 WP_013526187.1 heme lyase NrfEFG subunit NrfF -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19849.10 Da        Isoelectric Point: 8.9743

>NTDB_id=39416 HIBPF_RS06515 WP_013526183.1 1288332..1288844(-) (comN) [Haemophilus influenzae F3031]
MQKGMTLVELLIGLAIISIALNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFPNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=39416 HIBPF_RS06515 WP_013526183.1 1288332..1288844(-) (comN) [Haemophilus influenzae F3031]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGCGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCACCTAAAACAATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTCCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTCAATGTTGGCAGTATTCGTTTG
AAAACTAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

99.412

100

0.994

Multiple sequence alignment