Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HJ571_RS19580 Genome accession   NZ_CP053747
Coordinates   4204466..4205062 (-) Length   198 a.a.
NCBI ID   WP_034037949.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pae1255-NDM1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4199466..4210062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJ571_RS19555 - 4199860..4200009 (-) 150 Protein_3884 hypothetical protein -
  HJ571_RS19560 (HJ571_19585) - 4200102..4201685 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  HJ571_RS19565 (HJ571_19590) - 4201682..4202569 (+) 888 WP_023122609.1 SDR family NAD(P)-dependent oxidoreductase -
  HJ571_RS19570 (HJ571_19595) - 4202643..4203182 (+) 540 WP_003103931.1 CbrC family protein -
  HJ571_RS19575 (HJ571_19600) - 4203195..4204343 (-) 1149 WP_033994060.1 acyl-CoA dehydrogenase family protein -
  HJ571_RS19580 (HJ571_19605) recR 4204466..4205062 (-) 597 WP_034037949.1 recombination mediator RecR Machinery gene
  HJ571_RS19585 (HJ571_19610) - 4205141..4205467 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  HJ571_RS19590 (HJ571_19615) dnaX 4205513..4207600 (-) 2088 WP_031628140.1 DNA polymerase III subunit gamma/tau -
  HJ571_RS19595 (HJ571_19620) - 4207637..4208503 (+) 867 WP_003120462.1 substrate-binding periplasmic protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21231.46 Da        Isoelectric Point: 5.6405

>NTDB_id=394150 HJ571_RS19580 WP_034037949.1 4204466..4205062(-) (recR) [Pseudomonas aeruginosa strain Pae1255-NDM1]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEEIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=394150 HJ571_RS19580 WP_034037949.1 4204466..4205062(-) (recR) [Pseudomonas aeruginosa strain Pae1255-NDM1]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGAGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-78)

Toprim domain (Toprim_4)

(81-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48