Detailed information NTG0394092

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: HPY04_RS13310
• Genome accession: NZ_CP053744
• Coordinates: 2944830..2946665 (-)
• Length: 611 a.a.
• NCBI ID: WP_175249296.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SA3G
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2939830..2951665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY04_RS13290 (HPY04_13300)	fhuA	2939904..2942003 (-)	2100	WP_046127262.1	TonB-dependent siderophore receptor FhuA	-
HPY04_RS13295 (HPY04_13305)	-	2942138..2943967 (+)	1830	WP_175249237.1	ABC transporter ATP-binding protein	-
HPY04_RS13300 (HPY04_13310)	-	2944005..2944367 (-)	363	WP_175249238.1	hypothetical protein	-
HPY04_RS13305 (HPY04_13315)	-	2944538..2944837 (-)	300	WP_175249239.1	DUF3630 family protein	-
HPY04_RS13310 (HPY04_13320)	recQ	2944830..2946665 (-)	1836	WP_175249296.1	ATP-dependent DNA helicase RecQ	Machinery gene
HPY04_RS13315 (HPY04_13325)	rarD	2946832..2947734 (+)	903	WP_175249240.1	EamA family transporter RarD	-
HPY04_RS13320 (HPY04_13330)	ggt	2947908..2949662 (+)	1755	WP_175249241.1	gamma-glutamyltransferase	-
HPY04_RS13325 (HPY04_13335)	-	2949819..2950622 (+)	804	WP_175249242.1	AraC family transcriptional regulator	-
HPY04_RS13330 (HPY04_13340)	-	2950697..2951365 (+)	669	WP_175249243.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69112.33 Da
• Isoelectric Point: 7.0045

>NTDB_id=394092 HPY04_RS13310 WP_175249296.1 2944830..2946665(-) (recQ) [Vibrio cholerae strain SA3G]
MTATFMAESSALPATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDQPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=394092 HPY04_RS13310 WP_175249296.1 2944830..2946665(-) (recQ) [Vibrio cholerae strain SA3G]
ATGACCGCGACTTTCATGGCTGAATCTTCCGCTCTCCCTGCCACTCCTGAACGTGTATTGCACGAGGTGTTTGGTTATCA
GCAATTTCGCGTTGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACGGGCG
GTGGTAAATCACTCTGTTACCAGATCCCAGCTTTGGTATTAGAAGGGGTCACCTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAATGGTGTCGCCGCCGAGTGTGTCAATTCTACCTTGGCGCGCGAGGAGCT
GATCGCGATTTACAATCGCATGCACGCAGGGCAACTCAAGCTGTTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATTGAGCGTCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGCCCTGAATACGCTTCGTTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACTGCGACTGC
GGATGACGCGACGCGTCACGACATCATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGTTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACACAAGCCGGTTTCGCAAGTGATTCGTTATCTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTGGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGATGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGTCGTATGCTGGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCGA
TGGGCGCATTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGCTGCTCAATTATTTTGGCGAATATCGTGATCAGCCATGT
GGTAACTGCGATATCTGCCTCGATCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCACTGTCGTGTGTCTA
TCGCGTCAATCAAAACTTCGGGATCGGCTATGTGGTGGAAGTGCTGCGCGGCATGCAAAACATCCGCATTCGCGAGCATG
GCCACGACAAAATCACCACTTACGGCATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATC
CACAAAGGCATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCGCTGCTGCGCGG
TGAGATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCGGCGAAATCCGATAAATTGTCGGGAAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGACGAAGGGTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTATGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCGTTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• HRDC domain (HRDC) (537-603)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• DEAD/DEAH box helicase (DEAD) (33-188)

• RQC domain (RQC) (409-517)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394