Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HPY04_RS08985 Genome accession   NZ_CP053744
Coordinates   1999766..2000368 (-) Length   200 a.a.
NCBI ID   WP_054251109.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA3G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994766..2005368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY04_RS08955 (HPY04_08955) - 1995004..1995459 (-) 456 WP_001918409.1 Lrp/AsnC family transcriptional regulator -
  HPY04_RS08960 (HPY04_08960) - 1995584..1996651 (+) 1068 WP_001961193.1 PLP-dependent cysteine synthase family protein -
  HPY04_RS08965 (HPY04_08965) sohB 1996776..1997837 (-) 1062 WP_000394905.1 protease SohB -
  HPY04_RS08970 (HPY04_08970) - 1997996..1998739 (+) 744 WP_001109956.1 YciK family oxidoreductase -
  HPY04_RS08975 (HPY04_08975) - 1998833..1999270 (-) 438 WP_001884585.1 YcgN family cysteine cluster protein -
  HPY04_RS08980 (HPY04_08980) - 1999408..1999656 (+) 249 WP_000340598.1 YkgJ family cysteine cluster protein -
  HPY04_RS08985 (HPY04_08985) recR 1999766..2000368 (-) 603 WP_054251109.1 recombination mediator RecR Machinery gene
  HPY04_RS08990 (HPY04_08990) - 2000383..2000712 (-) 330 WP_000467102.1 YbaB/EbfC family nucleoid-associated protein -
  HPY04_RS08995 (HPY04_08995) dnaX 2000783..2002861 (-) 2079 WP_175249011.1 DNA polymerase III subunit gamma/tau -
  HPY04_RS09000 (HPY04_09000) apt 2002880..2003425 (-) 546 WP_000206218.1 adenine phosphoribosyltransferase -
  HPY04_RS09005 (HPY04_09005) - 2003557..2003955 (-) 399 WP_001880857.1 YbaN family protein -
  HPY04_RS19210 - 2003955..2004086 (-) 132 WP_000013199.1 hypothetical protein -
  HPY04_RS09010 (HPY04_09010) - 2004256..2005347 (-) 1092 WP_175249012.1 response regulator -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21910.06 Da        Isoelectric Point: 6.3274

>NTDB_id=394064 HPY04_RS08985 WP_054251109.1 1999766..2000368(-) (recR) [Vibrio cholerae strain SA3G]
MRTSHMLEHLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLAEALSQAMVEIGHCQECRTFTEQDVCHICRNPKRKEN
GQLCVVESPADIAALEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDTLDYRLQRGDISEVILATNPTVEGEATAQYIAEL
CREHQVTASRIAHGVPVGGELELVDGTTLSHSLLGRHKLF

Nucleotide


Download         Length: 603 bp        

>NTDB_id=394064 HPY04_RS08985 WP_054251109.1 1999766..2000368(-) (recR) [Vibrio cholerae strain SA3G]
ATGCGTACCAGTCACATGCTGGAACATTTGATGGAAGCATTACGCTGTCTGCCGGGTGTTGGCCCAAAATCAGCGCAGCG
TATGGCATTCCATCTGTTACAGCGCGATCGTAAAGGTGGTTTACAACTGGCTGAGGCACTGAGTCAGGCGATGGTCGAAA
TCGGCCATTGTCAGGAGTGCCGAACTTTTACTGAGCAGGATGTTTGCCACATCTGTAGAAACCCAAAACGTAAAGAAAAT
GGTCAGTTGTGTGTGGTTGAAAGCCCTGCAGATATTGCGGCGCTAGAAGCTACCGGTCAATTTTCTGGTCGCTATTTTGT
GTTGATGGGGCACTTATCACCGCTGGATGGTATTGGTCCGAGCGATATTGGCCTCGATACGCTGGATTATCGCTTGCAGC
GCGGTGATATCAGTGAGGTGATCCTCGCCACTAACCCGACGGTGGAAGGTGAGGCGACCGCGCAATACATTGCCGAGTTG
TGTCGTGAGCATCAAGTCACCGCAAGCCGCATTGCACATGGTGTTCCCGTGGGCGGCGAACTTGAGTTGGTGGATGGCAC
GACCTTATCGCATTCGCTGTTGGGCCGTCACAAACTGTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.5

0.445
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44