Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GCU76_RS17680 Genome accession   NZ_CP045425
Coordinates   3233237..3233881 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3228237..3238881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS17645 mrpB 3229429..3229860 (+) 432 WP_041339145.1 Na(+)/H(+) antiporter subunit B -
  GCU76_RS17650 mrpC 3229860..3230201 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GCU76_RS17655 mrpD 3230194..3231675 (+) 1482 WP_041052853.1 Na+/H+ antiporter subunit D -
  GCU76_RS17660 mrpE 3231681..3232157 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GCU76_RS17665 mrpF 3232157..3232441 (+) 285 WP_041052851.1 Na(+)/H(+) antiporter subunit F1 -
  GCU76_RS17670 mnhG 3232425..3232799 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  GCU76_RS17675 yuxO 3232838..3233218 (-) 381 WP_041052848.1 hotdog fold thioesterase -
  GCU76_RS17680 comA 3233237..3233881 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GCU76_RS17685 comP 3233962..3236274 (-) 2313 WP_103330147.1 sensor histidine kinase Regulator
  GCU76_RS17690 comX 3236290..3236511 (-) 222 WP_014480704.1 competence pheromone ComX -
  GCU76_RS17695 - 3236513..3237376 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  GCU76_RS17700 degQ 3237562..3237702 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GCU76_RS17705 - 3237924..3238049 (+) 126 WP_003228793.1 hypothetical protein -
  GCU76_RS17710 - 3238163..3238531 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=394009 GCU76_RS17680 WP_003220716.1 3233237..3233881(-) (comA) [Bacillus subtilis strain JAAA]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=394009 GCU76_RS17680 WP_003220716.1 3233237..3233881(-) (comA) [Bacillus subtilis strain JAAA]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment