Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GCU76_RS13735 Genome accession   NZ_CP045425
Coordinates   2527860..2528627 (-) Length   255 a.a.
NCBI ID   WP_017696274.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2522860..2533627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS13715 ppsR 2523035..2523847 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  GCU76_RS13720 ccpN 2523873..2524511 (-) 639 WP_152425520.1 transcriptional regulator CcpN -
  GCU76_RS13725 glyS 2524644..2526683 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  GCU76_RS13730 glyQ 2526676..2527563 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  GCU76_RS13735 recO 2527860..2528627 (-) 768 WP_017696274.1 DNA repair protein RecO Machinery gene
  GCU76_RS13740 yqzL 2528664..2528807 (-) 144 WP_003230053.1 YqzL family protein -
  GCU76_RS13745 era 2528955..2529860 (-) 906 WP_003230051.1 GTPase Era -
  GCU76_RS13750 - 2529841..2530251 (-) 411 WP_014480293.1 cytidine deaminase -
  GCU76_RS13755 unpK 2530370..2530741 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  GCU76_RS13760 ybeY 2530722..2531195 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  GCU76_RS13765 pgpH 2531196..2533331 (-) 2136 WP_080031083.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29346.03 Da        Isoelectric Point: 8.3080

>NTDB_id=393997 GCU76_RS13735 WP_017696274.1 2527860..2528627(-) (recO) [Bacillus subtilis strain JAAA]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKTNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=393997 GCU76_RS13735 WP_017696274.1 2527860..2528627(-) (recO) [Bacillus subtilis strain JAAA]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGAC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment