Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   GCU76_RS13190 Genome accession   NZ_CP045425
Coordinates   2436696..2437499 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2431696..2442499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS13165 glpQB 2432831..2433562 (-) 732 WP_152425519.1 glycerophosphodiester phosphodiesterase -
  GCU76_RS13170 yqiI 2433641..2434261 (-) 621 WP_080031089.1 N-acetylmuramoyl-L-alanine amidase -
  GCU76_RS13175 - 2434281..2434577 (-) 297 WP_014480225.1 hypothetical protein -
  GCU76_RS13180 - 2434888..2435040 (+) 153 WP_014480226.1 hypothetical protein -
  GCU76_RS13185 yqiG 2435113..2436231 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  GCU76_RS13190 spo0A 2436696..2437499 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  GCU76_RS13200 spoIVB 2437775..2439055 (-) 1281 WP_017696436.1 SpoIVB peptidase -
  GCU76_RS13205 recN 2439230..2440960 (-) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  GCU76_RS13210 argR 2440997..2441446 (-) 450 WP_017696434.1 arginine repressor ArgR -
  GCU76_RS13215 yqxC 2441544..2442389 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=393986 GCU76_RS13190 WP_003226427.1 2436696..2437499(-) (spo0A) [Bacillus subtilis strain JAAA]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=393986 GCU76_RS13190 WP_003226427.1 2436696..2437499(-) (spo0A) [Bacillus subtilis strain JAAA]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment