Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   GCU76_RS12175 Genome accession   NZ_CP045425
Coordinates   2255679..2256299 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2250679..2261299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS12135 ptsA 2251839..2252345 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  GCU76_RS12140 ypqA 2252483..2252902 (+) 420 WP_014480103.1 Hsp20/alpha crystallin family protein -
  GCU76_RS12145 sppG 2252923..2253300 (-) 378 WP_041053169.1 YppG family protein -
  GCU76_RS12150 yppF 2253487..2253675 (+) 189 WP_003230690.1 YppF family protein -
  GCU76_RS12155 yppE 2253714..2254085 (-) 372 WP_017696991.1 YppE family protein -
  GCU76_RS12160 yppD 2254131..2254376 (-) 246 WP_017696992.1 YppD family protein -
  GCU76_RS12165 sspM 2254575..2254679 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  GCU76_RS12170 yppC 2254712..2255638 (-) 927 WP_052470535.1 DUF2515 domain-containing protein -
  GCU76_RS12175 recU 2255679..2256299 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  GCU76_RS12180 ponA 2256321..2259065 (+) 2745 WP_017696993.1 PBP1A family penicillin-binding protein -
  GCU76_RS12185 ypoC 2259141..2259635 (-) 495 WP_009967579.1 YpoC family protein -
  GCU76_RS12190 nth 2259632..2260291 (-) 660 WP_009967580.1 endonuclease III -
  GCU76_RS12195 dnaD 2260310..2261008 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=393985 GCU76_RS12175 WP_004399067.1 2255679..2256299(+) (recU) [Bacillus subtilis strain JAAA]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=393985 GCU76_RS12175 WP_004399067.1 2255679..2256299(+) (recU) [Bacillus subtilis strain JAAA]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAGGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment