Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   HIBPF_RS00285 Genome accession   NC_014920
Coordinates   58712..61078 (-) Length   788 a.a.
NCBI ID   WP_013525419.1    Uniprot ID   -
Organism   Haemophilus influenzae F3031     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53712..66078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIBPF_RS00270 (HIBPF00550) kdsB 55002..55766 (-) 765 WP_013525417.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HIBPF_RS00275 (HIBPF00560) lpxK 55837..56835 (-) 999 WP_013525418.1 tetraacyldisaccharide 4'-kinase -
  HIBPF_RS00280 (HIBPF00570) msbA 56908..58671 (-) 1764 WP_005663238.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  HIBPF_RS00285 (HIBPF00580) rec2 58712..61078 (-) 2367 WP_013525419.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HIBPF_RS00290 (HIBPF00610) dksA 61337..61774 (+) 438 WP_005630220.1 RNA polymerase-binding protein DksA -
  HIBPF_RS00295 (HIBPF00620) pcnB 62021..63379 (+) 1359 WP_013525420.1 polynucleotide adenylyltransferase PcnB -
  HIBPF_RS00300 (HIBPF00630) folK 63388..63870 (+) 483 WP_006995701.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  HIBPF_RS00305 (HIBPF00640) tsaE 63946..64422 (+) 477 WP_013525421.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  HIBPF_RS00310 (HIBPF00650) - 64430..65728 (+) 1299 WP_005649777.1 N-acetylmuramoyl-L-alanine amidase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89493.13 Da        Isoelectric Point: 9.9841

>NTDB_id=39398 HIBPF_RS00285 WP_013525419.1 58712..61078(-) (rec2) [Haemophilus influenzae F3031]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVALVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAFGTVKSAVKIANVSSLRAEKLQQVRKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQSNTAHLIAISGLHIGLAM
GIGFCLARVVQVFCPTRFIHPYFPLVFSVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTVVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWIFSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGITGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWRIYREPE
ISSSNWQIKRAKFFTLNLSKPLLKNERINVLLCSFGIILLCFMILLFKQFSKPTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGAATILKAYPNVELITPSRKNYGENYRTFCTAGRDWHWQG
LHFQILFPHNVATRADNPHSCVILVYDGKHSVLLTGDAEAKNEQIFARTLGKIDVLQVGHHGSKTSTSEYLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTTFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=39398 HIBPF_RS00285 WP_013525419.1 58712..61078(-) (rec2) [Haemophilus influenzae F3031]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTTGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTCTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCTCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTCGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAG
GGGATTACCGCTTTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGAATGTTTCATCATTGCGTGCAGAAAAATTGCAACA
AGTGAGAAAGCAAACGGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTGGATA
AAACCACTTGGTCAATTTACCAACAAAGCAATACTGCGCATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGGATTGGATTTTGCTTGGCGCGTGTTGTGCAAGTCTTTTGCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TAGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGTGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGGTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGGGCGGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCACTTTTTCAATGGAAAAATCGCCCTTTTTCTCCAAAAGTGCGGTGGATTTTTAGTTTATTTCATTTGC
AATTTGGGTTATTGCTCTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGTTAAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAATTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTACCGAGAACCCGAG
ATTTCATCATCAAACTGGCAAATAAAACGAGCAAAATTTTTTACATTGAATCTCAGTAAACCTTTACTAAAAAATGAACG
AATCAACGTTTTGCTATGTTCTTTCGGCATTATTTTACTGTGTTTTATGATTTTGTTGTTTAAACAATTTAGTAAGCCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTGCGACAATTTTAAAGGCGTATCCCAATGTGGAAT
TGATTACCCCTTCACGGAAAAACTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTTTCCTCACAACGTTGCGACACGAGCTGATAATCCCCATTCTTGTGTGATTTTAGTCTATGA
TGGAAAGCATAGCGTTTTGCTAACTGGCGATGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCACTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCGACAAGTGAATACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
CATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-171)

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

96.447

100

0.964

Multiple sequence alignment