Detailed information NTG0393976

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HP430_RS15615
• Genome accession: NZ_CP053736
• Coordinates: 3241532..3242524 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CP8-3_Sichuan
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3236532..3247524

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HP430_RS15595 (HP430_15600)	otnK	3237307..3238569 (+)	1263	WP_172614325.1	3-oxo-tetronate kinase	-
HP430_RS15600 (HP430_15605)	ygbL	3238566..3239204 (+)	639	WP_001278994.1	aldolase	-
HP430_RS15605 (HP430_15610)	ygbM	3239209..3239985 (+)	777	WP_001136925.1	HPr family phosphocarrier protein	-
HP430_RS15610 (HP430_15615)	ygbN	3240074..3241438 (+)	1365	WP_000104459.1	GntP family transporter	-
HP430_RS15615 (HP430_15620)	rpoS	3241532..3242524 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HP430_RS15620 (HP430_15625)	nlpD	3242587..3243681 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HP430_RS15625 (HP430_15630)	pcm	3243866..3244492 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HP430_RS15630 (HP430_15635)	surE	3244486..3245247 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HP430_RS15635 (HP430_15640)	truD	3245228..3246277 (-)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
HP430_RS15640 (HP430_15645)	ispF	3246274..3246753 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HP430_RS15645 (HP430_15650)	ispD	3246753..3247463 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=393976 HP430_RS15615 WP_000081550.1 3241532..3242524(-) (rpoS) [Escherichia coli strain CP8-3_Sichuan]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=393976 HP430_RS15615 WP_000081550.1 3241532..3242524(-) (rpoS) [Escherichia coli strain CP8-3_Sichuan]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715