Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   GCU76_RS05650 Genome accession   NZ_CP045425
Coordinates   1084552..1085130 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain JAAA     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1079552..1090130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS05630 hemAT 1080071..1081369 (-) 1299 WP_026113635.1 heme-based aerotactic transducer HemAT -
  GCU76_RS05635 comW 1081508..1083037 (-) 1530 Protein_1034 FAD-dependent oxidoreductase -
  GCU76_RS05640 yhxC 1083141..1083998 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  GCU76_RS05645 yhzC 1084026..1084259 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  GCU76_RS05650 comK 1084552..1085130 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  GCU76_RS05655 yhxD 1085175..1086074 (-) 900 WP_017695343.1 SDR family oxidoreductase -
  GCU76_RS05660 yhjA 1086291..1086560 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  GCU76_RS05665 yhjB 1086604..1088073 (-) 1470 WP_017695341.1 sodium:solute symporter -
  GCU76_RS05670 yhjC 1088070..1088270 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  GCU76_RS05675 - 1088469..1088840 (-) 372 WP_014476361.1 hypothetical protein -
  GCU76_RS05680 yhjE 1088992..1089615 (+) 624 WP_010886465.1 VTT domain-containing protein -
  GCU76_RS05685 lepB 1089617..1090123 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=393967 GCU76_RS05650 WP_003245329.1 1084552..1085130(+) (comK) [Bacillus subtilis strain JAAA]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=393967 GCU76_RS05650 WP_003245329.1 1084552..1085130(+) (comK) [Bacillus subtilis strain JAAA]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment