Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   GCU76_RS04565 Genome accession   NZ_CP045425
Coordinates   889989..890783 (+) Length   264 a.a.
NCBI ID   WP_017697678.1    Uniprot ID   -
Organism   Bacillus subtilis strain JAAA     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 887356..894275 889989..890783 within 0


Gene organization within MGE regions


Location: 887356..894275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS04545 - 887356..888505 (+) 1150 Protein_838 IS3 family transposase -
  GCU76_RS04550 yfhD 888567..888758 (-) 192 WP_014479215.1 YfhD family protein -
  GCU76_RS04555 yfhE 888825..888935 (-) 111 WP_003223230.1 YfhE family protein -
  GCU76_RS04560 yfhF 888990..889900 (-) 911 Protein_841 TIGR01777 family oxidoreductase -
  GCU76_RS04565 recX 889989..890783 (+) 795 WP_017697678.1 recombination regulator RecX Regulator
  GCU76_RS04570 yfhH 890785..891099 (+) 315 WP_017697679.1 YfhH family protein -
  GCU76_RS04575 yfhI 891243..892436 (+) 1194 WP_080333437.1 MFS transporter -
  GCU76_RS04580 sspK 892468..892620 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  GCU76_RS04585 yfhJ 892745..893014 (+) 270 WP_003243789.1 YfhJ family protein -
  GCU76_RS04590 - 893125..894275 (+) 1151 WP_087614160.1 IS3 family transposase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30998.18 Da        Isoelectric Point: 6.6687

>NTDB_id=393963 GCU76_RS04565 WP_017697678.1 889989..890783(+) (recX) [Bacillus subtilis strain JAAA]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEEN

Nucleotide


Download         Length: 795 bp        

>NTDB_id=393963 GCU76_RS04565 WP_017697678.1 889989..890783(+) (recX) [Bacillus subtilis strain JAAA]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGGGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCAACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGAACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.62

99.621

0.992

Multiple sequence alignment