Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   GCU76_RS00245 Genome accession   NZ_CP045425
Coordinates   44422..44712 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain JAAA     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39422..49712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCU76_RS00205 darA 39445..39774 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  GCU76_RS00210 yaaR 39787..40227 (+) 441 WP_009966249.1 YaaR family protein -
  GCU76_RS00215 holB 40239..41228 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  GCU76_RS00220 ricT 41231..42058 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  GCU76_RS00225 yabA 42073..42432 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  GCU76_RS00230 trmNF 42491..43234 (+) 744 WP_152425284.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  GCU76_RS00235 yazA 43221..43520 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  GCU76_RS00240 rsmI 43495..44373 (+) 879 WP_017696383.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  GCU76_RS00245 abrB 44422..44712 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  GCU76_RS00250 metG 45207..47201 (+) 1995 WP_152425285.1 methionine--tRNA ligase -
  GCU76_RS00255 dayD 47280..48047 (+) 768 WP_017696381.1 TatD family hydrolase -
  GCU76_RS00260 yabE 48203..49516 (+) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=393953 GCU76_RS00245 WP_003226760.1 44422..44712(-) (abrB) [Bacillus subtilis strain JAAA]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=393953 GCU76_RS00245 WP_003226760.1 44422..44712(-) (abrB) [Bacillus subtilis strain JAAA]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment