Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   F8M42_RS07660 Genome accession   NZ_CP045424
Coordinates   1624872..1626230 (-) Length   452 a.a.
NCBI ID   WP_182185722.1    Uniprot ID   -
Organism   Pectinatus frisingensis strain MB139     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1619872..1631230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8M42_RS07635 cysE 1619906..1620655 (-) 750 WP_407672845.1 serine O-acetyltransferase -
  F8M42_RS07640 gltX 1620707..1622179 (-) 1473 WP_182185716.1 glutamate--tRNA ligase -
  F8M42_RS07645 ispF 1622237..1622725 (-) 489 WP_182185717.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  F8M42_RS07650 ispD 1622727..1623494 (-) 768 WP_182185719.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  F8M42_RS07655 - 1623589..1624698 (-) 1110 WP_182185721.1 PIN/TRAM domain-containing protein -
  F8M42_RS07660 radA 1624872..1626230 (-) 1359 WP_182185722.1 DNA repair protein RadA Machinery gene
  F8M42_RS07665 - 1626382..1628925 (-) 2544 WP_182185724.1 ATP-dependent Clp protease ATP-binding subunit -
  F8M42_RS07670 - 1628930..1630000 (-) 1071 WP_182185726.1 protein arginine kinase -
  F8M42_RS07675 - 1630013..1630558 (-) 546 WP_182185727.1 UvrB/UvrC motif-containing protein -
  F8M42_RS07680 - 1630561..1631016 (-) 456 WP_182185728.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49334.65 Da        Isoelectric Point: 8.4072

>NTDB_id=393948 F8M42_RS07660 WP_182185722.1 1624872..1626230(-) (radA) [Pectinatus frisingensis strain MB139]
MAKKKSVFVCQECGYDSPKWVGKCPGCGAWNTMVEEIIKSDIRHGLSLELKGENHTPQLLSEISLTKTPRFSTGSPELDR
VLGGGVIPGSLVLMVGDPGVGKSSLNLRVCAYAARDRKVLYVTGEESLQQIRMRAERINALSDTMKVFSETDMERINMQI
EREKPDLLVIDSIQTIFRPDIQSAPGSVSQVRECAVELLRIAKSMAIAVFIIGHVTKDGTLAGPRVLEHIVDTVLYFEGE
RNAQFRILRAIKNRFGSTNEIGLFEMRDVGLVDVPDASKLFLSETVIDSGITIAPTVEGTRPLLVEIQALVASTPYIPPR
RTSDCVDIKRIQLLLAVLEKRLNLSIGACDVYVKIAGGIKIDEPACDLALCVALASSFMNKAVKEKTVIFGEVGLSGEVR
AVNGADIRVKEACKLGFTNIVIPQKNVKVVGKMQKAKIFGVNNVREALKAAL

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=393948 F8M42_RS07660 WP_182185722.1 1624872..1626230(-) (radA) [Pectinatus frisingensis strain MB139]
GTGGCAAAAAAGAAAAGTGTTTTTGTTTGCCAGGAATGTGGCTACGATTCACCTAAGTGGGTTGGAAAATGTCCGGGCTG
CGGTGCTTGGAATACGATGGTCGAAGAAATCATTAAGTCTGATATACGACATGGATTATCATTGGAACTAAAGGGAGAAA
ACCACACACCTCAACTATTATCGGAAATATCATTGACAAAGACGCCACGTTTCAGTACAGGATCACCAGAGCTTGACCGT
GTATTGGGCGGCGGGGTGATACCGGGCAGTCTGGTTTTGATGGTTGGTGATCCCGGTGTAGGAAAATCCAGCTTAAACCT
GCGGGTATGTGCTTATGCGGCAAGAGATCGGAAAGTTCTTTATGTGACAGGAGAAGAAAGTTTGCAGCAGATTCGTATGC
GTGCTGAACGAATAAATGCGCTTTCCGATACGATGAAGGTATTTAGTGAAACTGATATGGAACGGATAAATATGCAGATT
GAACGGGAAAAACCAGACTTGTTAGTAATTGATTCTATTCAGACAATTTTTCGACCTGATATTCAAAGTGCTCCAGGCAG
TGTCAGTCAGGTGCGGGAATGTGCGGTTGAACTTTTACGAATAGCCAAAAGTATGGCAATTGCTGTTTTTATAATCGGGC
ATGTTACTAAAGATGGGACTTTAGCCGGACCACGTGTCTTGGAACATATTGTTGATACGGTACTTTATTTTGAGGGCGAA
CGTAATGCACAGTTTCGTATTTTGCGGGCAATAAAAAATCGTTTTGGCAGTACCAATGAGATTGGATTGTTTGAGATGCG
GGATGTCGGATTAGTCGATGTACCTGATGCTTCAAAGTTATTTTTATCAGAAACGGTAATTGATTCGGGAATAACTATAG
CACCTACAGTGGAAGGAACACGACCGCTGCTGGTTGAAATACAGGCATTAGTAGCATCTACGCCCTATATACCACCGCGT
CGTACATCTGATTGTGTTGATATAAAACGGATACAATTATTACTGGCTGTTTTGGAAAAAAGATTGAATTTGAGTATAGG
TGCTTGTGATGTATATGTAAAAATCGCCGGAGGTATAAAAATTGATGAACCGGCGTGTGATTTGGCACTTTGCGTGGCGC
TGGCATCAAGTTTTATGAATAAAGCAGTAAAAGAAAAAACAGTTATATTCGGTGAAGTGGGTTTATCAGGTGAAGTCCGT
GCTGTAAACGGGGCTGACATCAGAGTTAAGGAAGCGTGTAAGCTTGGTTTTACAAATATTGTAATTCCGCAAAAAAATGT
TAAAGTAGTTGGCAAGATGCAAAAAGCAAAAATATTTGGTGTAAATAATGTGCGTGAGGCATTAAAGGCAGCACTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-426)

AAA domain (AAA_25)

(68-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.954

100

0.535
  radA Streptococcus mitis NCTC 12261

50.889

99.558

0.507
  radA Streptococcus mitis SK321

50.889

99.558

0.507
  radA Streptococcus pneumoniae Rx1

50.889

99.558

0.507
  radA Streptococcus pneumoniae D39

50.889

99.558

0.507
  radA Streptococcus pneumoniae R6

50.889

99.558

0.507
  radA Streptococcus pneumoniae TIGR4

50.889

99.558

0.507

Multiple sequence alignment