Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HP430_RS04070 Genome accession   NZ_CP053736
Coordinates   846495..847100 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CP8-3_Sichuan     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 841495..852100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP430_RS04040 (HP430_04040) rsmS 842200..842361 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  HP430_RS04045 (HP430_04045) priC 842375..842902 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  HP430_RS04050 (HP430_04050) ybaN 842972..843349 (+) 378 WP_001188905.1 DUF454 family protein -
  HP430_RS04055 (HP430_04055) apt 843502..844053 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HP430_RS04060 (HP430_04060) dnaX 844182..846113 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  HP430_RS04065 (HP430_04065) ybaB 846166..846495 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HP430_RS04070 (HP430_04070) recR 846495..847100 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HP430_RS04075 (HP430_04075) htpG 847210..849084 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  HP430_RS04080 (HP430_04080) adk 849265..849909 (+) 645 WP_001220233.1 adenylate kinase -
  HP430_RS04085 (HP430_04085) hemH 850145..851107 (+) 963 WP_001250103.1 ferrochelatase -
  HP430_RS04090 (HP430_04090) aes 851104..852063 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=393946 HP430_RS04070 WP_001195025.1 846495..847100(+) (recR) [Escherichia coli strain CP8-3_Sichuan]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=393946 HP430_RS04070 WP_001195025.1 846495..847100(+) (recR) [Escherichia coli strain CP8-3_Sichuan]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443