Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   STND_RS05330 Genome accession   NC_017563
Coordinates   997210..997692 (-) Length   160 a.a.
NCBI ID   WP_011226072.1    Uniprot ID   Q5M461
Organism   Streptococcus thermophilus ND03     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 992210..1002692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS05310 (STND_1057) pepT 992691..993914 (-) 1224 WP_014608366.1 peptidase T -
  STND_RS05315 (STND_1059) lepB 994122..994679 (-) 558 WP_011681191.1 signal peptidase I -
  STND_RS05320 (STND_1060) - 994802..996031 (-) 1230 WP_002953086.1 tetratricopeptide repeat protein -
  STND_RS05325 (STND_1061) - 996021..997199 (-) 1179 WP_014608367.1 AI-2E family transporter -
  STND_RS05330 (STND_1062) mutX 997210..997692 (-) 483 WP_011226072.1 NUDIX hydrolase Machinery gene
  STND_RS05335 (STND_1063) ftsX 997848..998777 (-) 930 WP_011681194.1 permease-like cell division protein FtsX -
  STND_RS05340 (STND_1064) ftsE 998770..999462 (-) 693 WP_002953094.1 cell division ATP-binding protein FtsE -
  STND_RS05350 (STND_1066) queG 1000701..1001819 (-) 1119 WP_011226076.1 tRNA epoxyqueuosine(34) reductase QueG -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18869.36 Da        Isoelectric Point: 4.7200

>NTDB_id=39392 STND_RS05330 WP_011226072.1 997210..997692(-) (mutX) [Streptococcus thermophilus ND03]
MTKLATICYIDNGKELLLLHRNKKPNDVHEGKWISVGGKLEAGETPDECARREIFEETHLTVKKMDFKGMITFPEFTPGH
DWYTYVFKVTDFEGKLISDEESREGTLEWVPYDQVLTKQTWEGDYEIFKWILEDKPFFSAKFSYDCNQNLIDKTVTFYDK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=39392 STND_RS05330 WP_011226072.1 997210..997692(-) (mutX) [Streptococcus thermophilus ND03]
ATGACAAAGTTAGCTACCATTTGTTATATTGACAATGGGAAGGAGCTTTTGCTCCTACATCGTAATAAAAAGCCTAATGA
TGTTCATGAAGGAAAGTGGATTTCTGTCGGGGGAAAACTAGAAGCGGGAGAAACGCCTGACGAATGTGCTCGTCGTGAAA
TTTTCGAGGAAACTCATTTGACAGTGAAAAAGATGGACTTCAAAGGTATGATTACCTTCCCAGAATTTACTCCGGGCCAC
GATTGGTATACCTATGTCTTTAAGGTGACTGATTTTGAAGGAAAACTCATTTCTGATGAGGAATCTCGTGAAGGGACACT
TGAATGGGTACCATATGATCAGGTTTTAACTAAACAAACCTGGGAAGGTGACTATGAGATTTTTAAGTGGATTCTAGAAG
ATAAACCTTTCTTCTCTGCAAAATTTAGCTACGATTGTAACCAAAACTTGATAGATAAAACTGTAACATTTTATGATAAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(3-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5M461

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

71.069

99.375

0.706

Multiple sequence alignment