Detailed information NTG0393871

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FIU84_RS19995
• Genome accession: NZ_CP045416
• Coordinates: 4229940..4231220 (-)
• Length: 426 a.a.
• NCBI ID: WP_063540669.1
• Uniprot ID: -
• Organism: Stutzerimonas frequens strain THAF7b
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4224940..4236220

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU84_RS19980 (FIU84_20025)	rpoH	4227290..4228144 (-)	855	WP_003297176.1	RNA polymerase sigma factor RpoH	-
FIU84_RS19985 (FIU84_20030)	ftsX	4228256..4229275 (-)	1020	WP_063540671.1	permease-like cell division protein FtsX	-
FIU84_RS19990 (FIU84_20035)	ftsE	4229272..4229943 (-)	672	WP_063540670.1	cell division ATP-binding protein FtsE	-
FIU84_RS19995 (FIU84_20040)	pilA	4229940..4231220 (-)	1281	WP_063540669.1	signal recognition particle-docking protein FtsY	Machinery gene
FIU84_RS20000 (FIU84_20045)	-	4231449..4232801 (+)	1353	WP_063540667.1	pitrilysin family protein	-
FIU84_RS20005 (FIU84_20050)	-	4232794..4234326 (+)	1533	WP_063540666.1	pitrilysin family protein	-
FIU84_RS20010 (FIU84_20055)	rsmD	4234326..4234928 (+)	603	WP_079328521.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FIU84_RS20015 (FIU84_20060)	-	4234940..4235344 (-)	405	WP_013984344.1	hypothetical protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 45412.73 Da
• Isoelectric Point: 4.6233

>NTDB_id=393871 FIU84_RS19995 WP_063540669.1 4229940..4231220(-) (pilA) [Stutzerimonas frequens strain THAF7b]
MFGSNDDKKTPAEPGEKKGLFGWLRKKPQPAPAEQPAAEQPDSESVEQTGAPVESPVATPQEEQPGRAVEADMQPAEVIE
PVLLHPEPEPEPEPEPEPEPEPVPAPVVATAPEAPTKLGFFARLRQGLSKTSASIGEGMASLFLGKKAIDDDLLDELETR
LLTADVGVEATTAIMQNLTRRVSRKELADSGALYTALQEELVGLLKPVEQPLAIDAGKRPYVILVVGVNGVGKTTTIGKL
AKKLQLDGKKVMLAAGDTFRAAAVEQLQVWGERNGIPVVAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNL
MEELKKVRRVMGKLDESAPHEVLLVLDAGTGQNAINQTKQFNQAVELTGLALTKLDGTAKGGVIFALAKQFGTPIRYIGV
GEGIDDLRTFEADAFVKALFSQREDA

Nucleotide

• Length: 1281 bp

>NTDB_id=393871 FIU84_RS19995 WP_063540669.1 4229940..4231220(-) (pilA) [Stutzerimonas frequens strain THAF7b]
ATGTTTGGTTCCAACGACGACAAGAAGACGCCGGCCGAGCCCGGTGAAAAGAAAGGCCTGTTCGGCTGGCTGCGCAAGAA
ACCGCAGCCCGCGCCGGCAGAGCAGCCCGCCGCCGAACAGCCGGACAGCGAATCGGTCGAGCAGACCGGGGCGCCTGTCG
AATCGCCTGTCGCGACACCTCAGGAAGAGCAACCGGGGCGCGCGGTCGAGGCTGATATGCAGCCGGCTGAGGTCATAGAG
CCGGTGCTGCTGCACCCTGAACCTGAACCTGAACCTGAACCCGAACCCGAACCCGAACCGGAGCCGGTACCTGCCCCGGT
CGTGGCGACCGCGCCGGAGGCCCCAACCAAGCTCGGCTTCTTCGCTCGCCTGCGCCAGGGGCTGTCGAAAACCAGCGCCA
GCATTGGCGAAGGTATGGCCAGCCTGTTCCTCGGCAAGAAGGCCATCGACGACGATCTGCTCGACGAACTGGAAACCCGC
CTGCTCACCGCCGACGTCGGCGTCGAGGCGACCACCGCGATCATGCAGAATCTCACCCGGCGCGTCTCGCGCAAGGAGCT
GGCCGACAGCGGCGCGCTCTACACCGCGCTGCAGGAAGAACTCGTTGGCCTGCTCAAGCCGGTCGAGCAGCCGCTGGCGA
TCGATGCTGGCAAGCGCCCGTATGTGATCCTGGTGGTCGGCGTGAACGGCGTCGGCAAGACCACCACCATCGGCAAGCTG
GCCAAGAAGCTGCAGCTCGACGGCAAGAAGGTCATGCTCGCCGCCGGCGACACCTTCCGCGCTGCGGCGGTGGAGCAGCT
GCAGGTGTGGGGCGAGCGCAACGGCATTCCGGTGGTCGCCCAGCACACCGGTGCCGATTCCGCCTCGGTGATCTTCGATG
CCGTGCAGGCCGCCAAGGCGCGCGGCATCGACGTGCTGATCGCCGACACCGCGGGCCGACTGCATACCAAGGACAACCTG
ATGGAAGAGCTGAAGAAAGTCCGTCGGGTGATGGGCAAGCTCGACGAGTCGGCTCCCCACGAAGTCCTGCTGGTACTCGA
CGCCGGCACTGGCCAGAACGCCATCAACCAGACCAAGCAGTTCAACCAGGCGGTCGAGCTGACCGGGCTGGCACTGACCA
AGCTCGACGGCACCGCCAAGGGCGGCGTGATCTTCGCGCTGGCCAAGCAGTTCGGCACGCCGATCCGCTACATCGGCGTG
GGTGAAGGCATCGACGATCTGCGCACCTTCGAGGCTGATGCCTTCGTCAAGGCGCTGTTCTCCCAGCGGGAAGACGCATG
A

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (221-420)

• SRP54-type protein, helical bundle domain (SRP54_N) (136-201)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.235	100	0.502