Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   FIU84_RS19800 Genome accession   NZ_CP045416
Coordinates   4192332..4192751 (-) Length   139 a.a.
NCBI ID   WP_152481923.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain THAF7b     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4190962..4192335 4192332..4192751 flank -3


Gene organization within MGE regions


Location: 4190962..4192751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU84_RS19795 (FIU84_19835) - 4190962..4192335 (-) 1374 WP_003458619.1 IS1182 family transposase -
  FIU84_RS19800 (FIU84_19840) pilG 4192332..4192751 (-) 420 WP_152481923.1 PleD family two-component system response regulator Regulator

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15430.01 Da        Isoelectric Point: 9.2014

>NTDB_id=393868 FIU84_RS19800 WP_152481923.1 4192332..4192751(-) (pilG) [Stutzerimonas frequens strain THAF7b]
MEQHSEGLKVMVIDDSKTIRRTAETLLKKVGCDVITAVDGFDALAKIADTHPRIIFVDIMMPRLDGYQTCALIKNNSSFK
STPVIMLSSKDGLFDKAKGRIVGSDQYLTKPFSKEELLAACRTFPLAGRIAHRSWNLTV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=393868 FIU84_RS19800 WP_152481923.1 4192332..4192751(-) (pilG) [Stutzerimonas frequens strain THAF7b]
ATGGAACAGCACTCCGAGGGCTTGAAGGTCATGGTGATCGACGATTCGAAGACGATTCGTCGCACCGCTGAAACCCTGCT
GAAGAAAGTAGGTTGCGATGTCATCACCGCTGTTGACGGTTTCGATGCGCTCGCCAAGATTGCAGATACTCATCCTCGTA
TCATCTTCGTCGATATTATGATGCCCAGGCTGGACGGTTATCAGACCTGTGCACTGATCAAGAACAACAGTTCCTTCAAG
TCGACGCCGGTGATCATGCTGTCTTCCAAAGATGGCCTCTTCGACAAGGCGAAAGGGCGTATCGTCGGGTCCGATCAATA
CCTCACCAAGCCGTTCAGCAAAGAAGAGCTGCTAGCAGCCTGTCGGACTTTTCCCCTCGCCGGTAGAATTGCGCATCGCT
CCTGGAACCTGACTGTATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.61

88.489

0.669

Multiple sequence alignment