Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   FIU84_RS18325 Genome accession   NZ_CP045416
Coordinates   3850404..3851999 (+) Length   531 a.a.
NCBI ID   WP_133455604.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain THAF7b     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3845404..3856999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU84_RS18305 (FIU84_18335) pgeF 3847159..3847896 (-) 738 WP_152481767.1 peptidoglycan editing factor PgeF -
  FIU84_RS18310 (FIU84_18340) rluD 3847893..3848867 (-) 975 WP_152481768.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FIU84_RS18315 (FIU84_18345) - 3849071..3850060 (+) 990 WP_152481769.1 outer membrane protein assembly factor BamD -
  FIU84_RS18320 (FIU84_18350) - 3850181..3850414 (+) 234 WP_110775887.1 PP0621 family protein -
  FIU84_RS18325 (FIU84_18355) pilS 3850404..3851999 (+) 1596 WP_133455604.1 PAS domain-containing sensor histidine kinase Regulator
  FIU84_RS18330 (FIU84_18360) pilR 3852127..3853464 (+) 1338 WP_152481770.1 sigma-54 dependent transcriptional regulator Regulator
  FIU84_RS18335 (FIU84_18365) - 3853543..3854598 (-) 1056 WP_063541891.1 DUF2333 family protein -
  FIU84_RS18340 (FIU84_18370) - 3854813..3856408 (+) 1596 WP_102838687.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58911.96 Da        Isoelectric Point: 8.1622

>NTDB_id=393866 FIU84_RS18325 WP_133455604.1 3850404..3851999(+) (pilS) [Stutzerimonas frequens strain THAF7b]
MGTENLAFLGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIVVAVLVQNPARDLPVL
GLALMDVILLSGLFYFGGGTPSGIGNLLIIAVAIANILLRGRIGFFVAAVAAIGLIYLTFYLSISRPEASSQYVQAAALG
TLCFAAAFLVQGLTRRLQASENLARQRAEDVANLEALNALILQRMRTGIMVLSPQERVLLANQGALQLLGQDESLTGERL
APRCPELLKALQQWRGNPTLRPQNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAH
EIRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRQGLTP
QQTVHVETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQQHSQAQVWLRLFRDEQSDLPIVEVLDDGPGIAADQLHNVFE
PFFTTESKGTGLGLYISRELCESNQARLDYRERPEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=393866 FIU84_RS18325 WP_133455604.1 3850404..3851999(+) (pilS) [Stutzerimonas frequens strain THAF7b]
GTGGGCACTGAAAACCTCGCTTTTCTCGGCGATCAGGGGCGACGCATCCTCCGCCTGTATCACCTCTATCGCCTGACCAT
CGGCCTGGCACTGGTACTGCTGATAAGCAGTGATCTGCACAACGACCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGTGCCTGGCTCTATCTGATCCTGAACATCGTGGTCGCCGTGCTGGTGCAGAACCCTGCGCGTGACCTGCCTGTGCTC
GGCCTGGCACTGATGGACGTGATCCTGCTGTCCGGCCTGTTCTATTTCGGTGGAGGCACGCCGAGTGGAATCGGCAACCT
GCTGATCATTGCGGTCGCGATCGCCAACATCCTGCTGCGCGGGCGCATCGGGTTCTTCGTTGCCGCCGTGGCAGCGATTG
GCCTGATCTACCTGACCTTCTATCTCAGCATCAGCCGGCCTGAAGCCAGCAGCCAGTATGTCCAGGCCGCCGCGCTCGGC
ACCCTCTGTTTCGCTGCCGCGTTTCTCGTGCAAGGCCTCACGCGGCGCCTGCAGGCGAGCGAAAATCTCGCACGCCAGCG
CGCCGAGGACGTCGCCAACCTCGAAGCACTCAACGCGCTTATCCTGCAGCGCATGCGCACCGGCATCATGGTGCTGAGCC
CCCAGGAACGCGTGCTGCTGGCCAACCAGGGCGCGCTGCAGCTACTCGGCCAGGACGAATCGCTGACCGGCGAGCGTCTT
GCCCCGCGCTGCCCGGAGTTGCTCAAAGCCCTGCAACAATGGCGCGGCAATCCCACCCTGCGCCCGCAGAATCTCAAGGC
AACGCCGGGTGGCCCGACGCTCCAGCCGAGCTTCGCCGCCCTGCAACATGGCAACAAGCTCGACACCCTGGTCTTTCTCG
AGGACATCTCGCAGATTGCGCAGAAAGCGCAGCAGCTCAAGCTCGCATCTCTCGGACGACTCACCGCCAGCATTGCCCAC
GAGATACGCAACCCGCTGGGCGCCATCAGCCATGCCGCACAGCTGCTTCAGGAGTCCGAGGAGCTGGACGGCCCGGACCG
TCGCCTGGCGCAGATCATTCAGGACCACTCTCGGCGCATGAATCTGGTCATCGAGAACGTCCTGCAACTCTCGCGGCGCC
GACAGGCCGAGCCACAGTTGTTGGACCTCAAGTACTGGCTGCATCGCTTCGCGAGCGAGTTCCGCCAAGGCCTGACCCCA
CAACAGACGGTGCATGTGGAAACGATCGGCAGTTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACCCAGGTGCTGAC
CAACCTGGTGCAGAACGGCCTGCGCTACAGCGGGCAGCAGCATTCGCAGGCGCAGGTCTGGCTGCGACTTTTCCGCGACG
AGCAGAGCGATCTGCCGATCGTCGAGGTGCTCGATGACGGCCCCGGCATTGCTGCCGACCAACTGCACAACGTGTTCGAG
CCGTTCTTTACCACCGAGAGCAAGGGCACCGGCCTGGGGCTTTACATCTCGCGAGAACTTTGCGAGAGCAATCAGGCTCG
ACTGGATTATCGCGAACGGCCCGAAGGCGGTAGCTGCTTCCGCATCGTCTTCGCCCACCCGCGTAAGCTGAGTTGA

Domains

Predicted by InterproScan.

PAS domain (PAS_8)

(202-250)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(418-524)

His Kinase A (phospho-acceptor) domain (HisKA)

(310-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.725

100

0.657

Multiple sequence alignment