Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FIU87_RS14195 Genome accession   NZ_CP045403
Coordinates   2704744..2705508 (-) Length   254 a.a.
NCBI ID   WP_152446580.1    Uniprot ID   A0A5P9HP91
Organism   Bacillus sp. THAF10     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2699744..2710508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS14175 (FIU87_14575) - 2699806..2700615 (-) 810 WP_152445195.1 pyruvate, water dikinase regulatory protein -
  FIU87_RS14180 (FIU87_14580) - 2700632..2701261 (-) 630 WP_152445196.1 helix-turn-helix transcriptional regulator -
  FIU87_RS14185 (FIU87_14585) glyS 2701478..2703559 (-) 2082 WP_152445197.1 glycine--tRNA ligase subunit beta -
  FIU87_RS14190 (FIU87_14590) glyQ 2703552..2704439 (-) 888 WP_152445198.1 glycine--tRNA ligase subunit alpha -
  FIU87_RS14195 (FIU87_14595) recO 2704744..2705508 (-) 765 WP_152446580.1 DNA repair protein RecO Machinery gene
  FIU87_RS14200 (FIU87_14600) - 2705640..2705780 (-) 141 WP_152445199.1 YqzL family protein -
  FIU87_RS14205 (FIU87_14605) era 2705929..2706846 (-) 918 WP_152445200.1 GTPase Era -
  FIU87_RS14210 (FIU87_14610) - 2706839..2707237 (-) 399 WP_152445201.1 cytidine deaminase -
  FIU87_RS14215 (FIU87_14615) - 2707347..2707745 (-) 399 WP_152445202.1 diacylglycerol kinase family protein -
  FIU87_RS14220 (FIU87_14620) ybeY 2707720..2708202 (-) 483 WP_152445203.1 rRNA maturation RNase YbeY -
  FIU87_RS14225 (FIU87_14625) - 2708199..2710394 (-) 2196 WP_152445204.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28885.38 Da        Isoelectric Point: 8.1378

>NTDB_id=393808 FIU87_RS14195 WP_152446580.1 2704744..2705508(-) (recO) [Bacillus sp. THAF10]
MLHKCEGIVIRTNAYGESNKILTIYSKELGKVGVMARGATKPSSRFTAVSQLFSHATFVFQKGRGLGSLQQGEILESMRS
IREDIFLTAYASYVVELMDRVTEEGNKNSALYELLYQTLHYIDEGFDPEILLFIFELKMCDRLGITPQLNCCASCGATEG
SFAFSIKEGGFLCNQCFHKDPHLIKISPATLKILRAFYYYDLSRIGNISLKEETRKEIRFVLDEYYEAYSGIMLKSKRFL
NQIGTMKANFDKKN

Nucleotide


Download         Length: 765 bp        

>NTDB_id=393808 FIU87_RS14195 WP_152446580.1 2704744..2705508(-) (recO) [Bacillus sp. THAF10]
TTGCTACACAAATGTGAAGGGATAGTCATTCGTACGAATGCATATGGAGAAAGTAATAAAATACTCACCATCTACTCAAA
AGAACTCGGGAAGGTAGGAGTAATGGCTAGAGGTGCTACAAAACCGAGCAGTCGATTTACTGCGGTTTCACAGCTTTTTT
CACATGCAACATTCGTTTTTCAAAAGGGTCGTGGGTTAGGAAGTCTTCAGCAAGGTGAAATTTTGGAATCGATGCGATCG
ATTCGAGAAGATATTTTTCTTACCGCTTATGCTTCTTATGTGGTGGAACTAATGGACAGAGTAACAGAGGAAGGCAATAA
GAATAGCGCTTTGTATGAGCTTTTGTATCAAACCCTCCATTACATAGACGAAGGCTTTGATCCGGAAATTCTTTTGTTTA
TTTTTGAATTGAAGATGTGTGATCGACTTGGAATAACGCCTCAGCTTAATTGCTGTGCGTCCTGCGGGGCAACGGAGGGA
AGCTTTGCATTTTCCATTAAAGAGGGTGGCTTCCTTTGCAATCAATGCTTTCATAAGGATCCACATCTTATAAAAATAAG
TCCTGCAACGCTAAAGATCCTTCGAGCATTTTATTATTATGATTTAAGTCGTATCGGCAATATCTCTCTCAAAGAAGAAA
CAAGAAAAGAAATTCGTTTTGTTTTAGATGAATATTATGAGGCTTATTCAGGCATTATGTTAAAATCAAAACGTTTTCTA
AATCAGATAGGAACCATGAAGGCAAATTTCGATAAAAAAAATTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HP91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

56.68

97.244

0.551

Multiple sequence alignment