Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FIU87_RS11605 Genome accession   NZ_CP045403
Coordinates   2225134..2225730 (+) Length   198 a.a.
NCBI ID   WP_152444748.1    Uniprot ID   A0A5P9HMS2
Organism   Bacillus sp. THAF10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2220134..2230730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS11570 (FIU87_11905) - 2220539..2221006 (+) 468 WP_172971040.1 Hsp20/alpha crystallin family protein -
  FIU87_RS11575 (FIU87_11910) - 2221394..2221579 (+) 186 WP_152444744.1 hypothetical protein -
  FIU87_RS11580 (FIU87_11915) - 2221653..2222231 (-) 579 WP_253905400.1 YppG family protein -
  FIU87_RS11585 (FIU87_11920) yppF 2222538..2222741 (+) 204 WP_152446523.1 YppF family protein -
  FIU87_RS11590 (FIU87_11925) - 2222772..2223137 (-) 366 WP_172971041.1 YppE family protein -
  FIU87_RS11595 (FIU87_11930) - 2223171..2223428 (-) 258 WP_152444746.1 hypothetical protein -
  FIU87_RS21235 (FIU87_11935) - 2223596..2223736 (+) 141 WP_216647582.1 hypothetical protein -
  FIU87_RS11600 (FIU87_11940) - 2224050..2225057 (-) 1008 WP_152444747.1 DUF2515 family protein -
  FIU87_RS11605 (FIU87_11945) recU 2225134..2225730 (+) 597 WP_152444748.1 Holliday junction resolvase RecU Machinery gene
  FIU87_RS11610 (FIU87_11950) - 2225771..2228452 (+) 2682 WP_152444749.1 penicillin-binding protein 1A -
  FIU87_RS11615 (FIU87_11955) - 2228492..2228995 (-) 504 WP_152444750.1 YpoC family protein -
  FIU87_RS11620 (FIU87_11960) nth 2228996..2229649 (-) 654 WP_152444751.1 endonuclease III -
  FIU87_RS11625 (FIU87_11965) - 2229665..2230369 (-) 705 WP_152444752.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23070.53 Da        Isoelectric Point: 9.4114

>NTDB_id=393803 FIU87_RS11605 WP_152444748.1 2225134..2225730(+) (recU) [Bacillus sp. THAF10]
MTIRYPNGKIYHDKGAVKTTKTSTTLYGNRGMSLEEDLQETNVYYLHQDIAVVHKKPTPIQIVDVHYPKRSAAVIKEAYF
KQASTTDFNGVYKGRYLDFEAKETKNKTSFPLQNFHEHQIHHMKQVVKQNGICFVILMFSSFNEVYLLPAEKLFIYWERM
QAGLRKSIAKAEIEADGYLIPIGYQPRLDYLKVIDQHF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=393803 FIU87_RS11605 WP_152444748.1 2225134..2225730(+) (recU) [Bacillus sp. THAF10]
ATGACTATTAGATATCCAAACGGAAAAATTTATCATGACAAAGGCGCGGTCAAAACCACAAAAACATCCACCACGCTATA
TGGAAATCGCGGAATGAGTCTAGAAGAAGACTTACAAGAGACAAACGTTTATTATTTACATCAGGATATAGCTGTGGTTC
ATAAAAAACCTACTCCCATCCAAATTGTTGATGTACATTACCCTAAGCGAAGTGCTGCTGTGATTAAGGAAGCTTATTTT
AAACAAGCCTCTACAACCGACTTTAACGGGGTATATAAAGGACGATATCTTGATTTTGAAGCAAAGGAAACGAAAAACAA
AACCTCCTTCCCACTGCAAAACTTTCATGAGCACCAAATTCATCATATGAAGCAAGTTGTGAAACAAAATGGGATTTGTT
TCGTCATATTAATGTTCAGTTCTTTTAATGAGGTATATTTGCTCCCAGCAGAAAAGCTATTCATCTATTGGGAAAGAATG
CAGGCTGGGCTAAGAAAATCAATAGCAAAGGCTGAAATTGAAGCGGATGGATACCTTATTCCAATCGGTTATCAGCCAAG
ACTAGACTACCTCAAAGTTATTGACCAACATTTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HMS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

64.796

98.99

0.641

Multiple sequence alignment