Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FIU87_RS06800 Genome accession   NZ_CP045403
Coordinates   1297806..1299620 (+) Length   604 a.a.
NCBI ID   WP_152443881.1    Uniprot ID   A0A5P9HK06
Organism   Bacillus sp. THAF10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1292806..1304620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS06785 (FIU87_07005) mecA 1293866..1294558 (+) 693 WP_152443878.1 adaptor protein MecA Regulator
  FIU87_RS06790 (FIU87_07010) cls 1294626..1296137 (+) 1512 WP_152443879.1 cardiolipin synthase -
  FIU87_RS06795 (FIU87_07015) - 1296518..1297708 (+) 1191 WP_152443880.1 competence protein CoiA -
  FIU87_RS06800 (FIU87_07020) pepF 1297806..1299620 (+) 1815 WP_152443881.1 oligoendopeptidase F Regulator
  FIU87_RS06805 (FIU87_07035) - 1300169..1300873 (-) 705 WP_152443882.1 hypothetical protein -
  FIU87_RS06810 (FIU87_07040) - 1300983..1301834 (-) 852 WP_253905529.1 ClpXP adapter SpxH family protein -
  FIU87_RS06815 (FIU87_07045) - 1301852..1302259 (-) 408 WP_152443884.1 globin -
  FIU87_RS06820 (FIU87_07050) - 1302418..1303083 (-) 666 WP_253905530.1 lytic transglycosylase domain-containing protein -
  FIU87_RS06825 (FIU87_07055) - 1303080..1303688 (-) 609 WP_152443885.1 CYTH domain-containing protein -
  FIU87_RS06830 (FIU87_07060) - 1304118..1304486 (+) 369 WP_152443886.1 hypothetical protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69821.04 Da        Isoelectric Point: 4.6656

>NTDB_id=393797 FIU87_RS06800 WP_152443881.1 1297806..1299620(+) (pepF) [Bacillus sp. THAF10]
MAEQTAVKKLQERKDITVEDTWRLEDIFESDKEWETEFQEVKGLIAKIKDYEGKLSESADTLYEALQYQDSISSRLGKLY
TYAHMRYDQDTTNSFYQGLNDRAANLYTQVASALSFVVPEILTMKEEEISSFLQEKEELKLYEHSLDEINRQRPHVLSAK
EEALLAEASEVLSSSSNTFGMLNNADLTFPSVKDENGEEVEITHGRYIRFLESEVQEVRKNAFKAVYETYGNYRNTFSST
LSGAVKKDNFQAKVRNYDSARQAALSNNNIPETVYDNLVNTINKNLHLLHRYVKLRKKVLELDELHMYDLYTPLIKEANM
TVSYDEAKEYLVKGLAPLGQEYLDIVQEGFDNRWVDIHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYHTRKTQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHFLEGFRGTVFRQTMFAEFEHKIHELAQ
NGEALTADLLTETYYELNKKYFGDDITIDEEIGLEWARIPHFYYNYYVYQYATGYSAATALSKQILEEGEPAVERYLEFL
KAGSSDYPIEVLKKAGVDMTQTTPIEEACKVFEEKLKEMEALLS

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=393797 FIU87_RS06800 WP_152443881.1 1297806..1299620(+) (pepF) [Bacillus sp. THAF10]
ATGGCAGAACAAACTGCAGTAAAAAAACTTCAGGAACGTAAAGATATCACAGTAGAAGACACTTGGAGATTAGAGGATAT
TTTTGAAAGTGATAAAGAATGGGAGACGGAATTTCAAGAAGTGAAGGGCTTGATTGCAAAAATCAAAGATTATGAAGGAA
AACTTTCAGAATCTGCCGATACATTGTATGAAGCCTTGCAATACCAAGATTCTATCTCAAGCAGATTAGGAAAGCTTTAT
ACATATGCACATATGCGTTATGACCAGGATACAACTAATTCCTTCTATCAAGGGCTAAATGATCGAGCTGCTAATCTTTA
TACACAGGTGGCAAGTGCATTATCCTTTGTTGTTCCAGAAATTTTGACCATGAAGGAAGAGGAGATCTCCTCGTTCTTAC
AAGAAAAAGAAGAGCTAAAATTGTATGAGCATTCCTTAGATGAAATAAACCGCCAACGTCCGCATGTATTATCTGCAAAA
GAGGAAGCACTTTTAGCAGAAGCTTCGGAAGTGTTGTCTTCTTCCTCTAACACATTTGGCATGCTAAACAATGCGGATTT
GACGTTCCCTTCTGTAAAAGATGAAAATGGGGAAGAAGTCGAAATCACGCATGGTCGTTATATTCGCTTTTTAGAAAGTG
AAGTTCAGGAAGTGCGTAAGAATGCATTTAAAGCAGTTTATGAGACATATGGAAATTACCGCAACACATTTTCCAGTACA
TTAAGTGGAGCTGTGAAGAAAGATAATTTCCAAGCAAAGGTTCGCAATTATGACTCTGCTCGCCAGGCAGCACTTAGCAA
CAACAATATACCTGAAACGGTGTATGATAATCTTGTAAATACCATCAATAAAAACCTTCACCTCTTGCATCGTTATGTAA
AGCTTCGTAAAAAGGTGTTAGAGCTTGATGAGTTGCATATGTATGACCTTTACACACCGTTAATCAAAGAAGCAAATATG
ACTGTGAGCTACGATGAGGCGAAAGAATATTTAGTCAAAGGTCTAGCGCCACTTGGTCAAGAGTACTTGGATATTGTCCA
AGAAGGCTTTGATAACAGGTGGGTAGACATCCATGAAAACAAAGGGAAACGTTCTGGAGCGTATTCCTCAGGGACTTATG
GAACCAATCCATACATTCTAATGAATTGGCAGGACAATGTAAATAACCTGTTTACGCTTGCACATGAATTCGGTCATTCC
GTTCATAGCTACCATACAAGGAAAACTCAGCCATATCCTTATGGGAATTATTCCATCTTCGTAGCTGAGGTTGCCTCAAC
TTGTAATGAAGCGTTGTTAAATGATTATCTATTAAAAACTATCGACGATGATAAGAAACGTCTATATTTACTAAATCACT
TCTTAGAGGGCTTCCGTGGTACTGTTTTCCGTCAAACCATGTTTGCTGAATTTGAGCATAAGATTCATGAACTTGCGCAA
AACGGAGAAGCGCTTACAGCTGACTTATTGACAGAAACCTACTATGAACTAAACAAAAAGTATTTTGGTGATGATATTAC
GATCGATGAAGAAATTGGCTTAGAGTGGGCTAGAATTCCTCACTTCTATTACAATTATTATGTGTACCAATATGCTACTG
GGTACAGTGCAGCAACTGCGCTAAGTAAGCAAATTTTAGAAGAAGGCGAGCCAGCTGTTGAACGATACCTAGAGTTCTTA
AAAGCTGGAAGCTCTGATTATCCGATTGAAGTACTGAAAAAAGCTGGCGTGGATATGACACAAACCACTCCAATTGAAGA
AGCATGTAAAGTTTTTGAAGAGAAGCTTAAAGAGATGGAAGCGTTGCTCTCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P9HK06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.429

96.523

0.487

Multiple sequence alignment