Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   STND_RS02575 Genome accession   NC_017563
Coordinates   476722..477528 (+) Length   268 a.a.
NCBI ID   WP_014608061.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 471722..482528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS02555 (STND_0484) tuf 472771..473967 (+) 1197 WP_002949971.1 elongation factor Tu -
  STND_RS02560 (STND_0485) tpiA 474216..474974 (+) 759 WP_002946314.1 triose-phosphate isomerase -
  STND_RS02565 (STND_0486) tmk 475212..475841 (+) 630 WP_014608059.1 dTMP kinase -
  STND_RS02570 (STND_0487) - 475850..476725 (+) 876 WP_014608060.1 DNA polymerase III subunit delta' -
  STND_RS02575 (STND_0488) yaaT 476722..477528 (+) 807 WP_014608061.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  STND_RS02580 (STND_0489) yabA 477515..477835 (+) 321 WP_002946304.1 DNA replication initiation control protein YabA -
  STND_RS02585 (STND_0490) rsmI 477838..478704 (+) 867 WP_014608062.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  STND_RS02590 (STND_0491) - 478841..480076 (+) 1236 WP_024704224.1 ammonium transporter -
  STND_RS02595 (STND_0492) - 480087..480428 (+) 342 WP_011680840.1 P-II family nitrogen regulator -
  STND_RS02600 (STND_0493) - 480526..481182 (+) 657 WP_011680841.1 glycoside hydrolase family 73 protein -
  STND_RS02605 (STND_0494) - 481205..482026 (+) 822 WP_014608064.1 Cof-type HAD-IIB family hydrolase -
  STND_RS11220 - 482045..482515 (-) 471 Protein_462 YgjV family protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29744.14 Da        Isoelectric Point: 4.5800

>NTDB_id=39379 STND_RS02575 WP_014608061.1 476722..477528(+) (yaaT) [Streptococcus thermophilus ND03]
MTEVIGIKFEENGAVEYVVPDKNYTKGDFVVVLEKKDKRLAQVVMENTVFPEVSLPVDLNRVEGLASERDFARYDENLLK
AEQSMGVVADLIAQNQLDMKVVDIVFPLNSSYVLISFVAEKRVDFRQLLEDLAAYFKTRIELRQISSREESKIYGGLGPC
GRALCCSSFLGEFPPVSIKMAKNQSLSLNSGKMNGVCGRLMCCLSYEDDFYRDSKASYPDLGEEIETKEGRGQVIAIDVI
AGTVKVMFDKGGAPLTYGVEEVQLNGKA

Nucleotide


Download         Length: 807 bp        

>NTDB_id=39379 STND_RS02575 WP_014608061.1 476722..477528(+) (yaaT) [Streptococcus thermophilus ND03]
ATGACAGAAGTCATTGGAATCAAATTTGAAGAAAATGGAGCGGTAGAATACGTTGTTCCTGATAAAAATTACACCAAAGG
TGACTTTGTAGTCGTTTTGGAGAAAAAAGATAAGCGTTTAGCCCAGGTTGTTATGGAAAATACTGTTTTTCCAGAGGTTA
GTTTACCTGTGGATTTGAATCGGGTCGAAGGCTTGGCTAGTGAGAGAGATTTCGCTAGATATGATGAAAATCTTTTAAAG
GCTGAACAGAGTATGGGAGTAGTGGCTGATTTAATTGCTCAAAATCAGCTAGATATGAAAGTGGTGGACATAGTCTTTCC
TCTAAATAGCTCTTATGTGCTTATCAGTTTCGTGGCTGAAAAGCGGGTAGATTTTCGTCAATTGCTCGAGGATTTGGCGG
CTTATTTTAAGACGCGAATTGAGTTACGTCAAATTTCCAGTCGTGAGGAATCAAAAATTTATGGTGGTTTAGGTCCTTGT
GGACGTGCACTGTGTTGTTCTAGTTTTTTGGGCGAATTCCCACCGGTATCGATTAAGATGGCTAAAAATCAAAGTTTGTC
CTTGAATTCTGGTAAGATGAACGGTGTCTGTGGACGTCTCATGTGTTGTCTCAGTTATGAAGATGATTTTTACCGAGACA
GTAAGGCTAGTTATCCTGACTTGGGTGAAGAGATTGAGACCAAGGAAGGTAGAGGTCAAGTCATTGCTATTGATGTGATT
GCAGGGACTGTTAAAGTTATGTTTGACAAAGGGGGAGCTCCCCTAACTTATGGAGTGGAGGAAGTTCAGCTAAATGGAAA
AGCGTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(61-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

42.205

98.134

0.414

Multiple sequence alignment