Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FIU87_RS00240 Genome accession   NZ_CP045403
Coordinates   46926..47207 (-) Length   93 a.a.
NCBI ID   WP_152442768.1    Uniprot ID   -
Organism   Bacillus sp. THAF10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 41926..52207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU87_RS00210 (FIU87_00215) - 42301..42741 (+) 441 WP_152442762.1 YaaR family protein -
  FIU87_RS00215 (FIU87_00220) holB 42757..43752 (+) 996 WP_152442763.1 DNA polymerase III subunit delta' -
  FIU87_RS00220 (FIU87_00225) - 43753..44580 (+) 828 WP_152442764.1 stage 0 sporulation family protein -
  FIU87_RS00225 (FIU87_00230) yabA 44593..44964 (+) 372 WP_152442765.1 DNA replication initiation control protein YabA -
  FIU87_RS00230 (FIU87_00235) - 45051..45821 (+) 771 WP_152442766.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FIU87_RS00235 (FIU87_00240) rsmI 45824..46708 (+) 885 WP_152442767.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FIU87_RS00240 (FIU87_00245) abrB 46926..47207 (-) 282 WP_152442768.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FIU87_RS00245 (FIU87_00250) metG 47752..49740 (+) 1989 WP_152442769.1 methionine--tRNA ligase -
  FIU87_RS00250 (FIU87_00255) - 49878..50645 (+) 768 WP_152442770.1 TatD family hydrolase -
  FIU87_RS00255 (FIU87_00260) - 50871..52079 (+) 1209 WP_152442771.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10440.16 Da        Isoelectric Point: 6.3545

>NTDB_id=393779 FIU87_RS00240 WP_152442768.1 46926..47207(-) (abrB) [Bacillus sp. THAF10]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDSNLSLAEGKIILSREGAE
KIIQEIQNNLQTK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=393779 FIU87_RS00240 WP_152442768.1 46926..47207(-) (abrB) [Bacillus sp. THAF10]
ATGAAATCTACTGGTATTGTACGTAAAGTTGATGAACTAGGTCGTGTGGTTATTCCTATCGAGCTTAGAAGAACATTAGG
CATCGCTGAGAAGGATGCTTTAGAAATTTATGTAGATGACGAAAAAATCATCTTGAAAAAATACAAGCCAAACATGACTT
GCCAAGTTACTGGTGAAGTATCTGACAGCAACCTTTCTCTTGCAGAAGGAAAAATCATTCTTAGCCGTGAAGGTGCAGAA
AAGATTATCCAAGAAATCCAAAACAATCTTCAAACAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

89.13

98.925

0.882

Multiple sequence alignment