Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GYMC52_RS12140 Genome accession   NC_014915
Coordinates   2481361..2483082 (-) Length   573 a.a.
NCBI ID   WP_012820589.1    Uniprot ID   A0A0E0TDG7
Organism   Geobacillus sp. Y412MC52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2476361..2488082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC52_RS12120 (GYMC52_2406) - 2477124..2477372 (+) 249 WP_012820592.1 DUF2627 domain-containing protein -
  GYMC52_RS12125 (GYMC52_2407) - 2477448..2478176 (-) 729 WP_012820591.1 glycerophosphodiester phosphodiesterase -
  GYMC52_RS18200 (GYMC52_2408) - 2478285..2478437 (+) 153 WP_011231868.1 YycC family protein -
  GYMC52_RS12130 (GYMC52_2409) spo0A 2478589..2479407 (-) 819 WP_025038882.1 sporulation transcription factor Spo0A -
  GYMC52_RS12135 (GYMC52_2410) spoIVB 2479792..2481087 (-) 1296 WP_012820590.1 SpoIVB peptidase -
  GYMC52_RS12140 (GYMC52_2411) recN 2481361..2483082 (-) 1722 WP_012820589.1 DNA repair protein RecN Machinery gene
  GYMC52_RS12145 (GYMC52_2412) ahrC 2483209..2483658 (-) 450 WP_011231872.1 transcriptional regulator AhrC/ArgR -
  GYMC52_RS12150 (GYMC52_2413) - 2483708..2484556 (-) 849 WP_012820588.1 TlyA family RNA methyltransferase -
  GYMC52_RS12155 (GYMC52_2414) dxs 2484560..2486452 (-) 1893 WP_013144772.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GYMC52_RS12160 (GYMC52_2415) - 2486700..2487593 (-) 894 WP_012820586.1 polyprenyl synthetase family protein -
  GYMC52_RS12165 (GYMC52_2416) - 2487597..2487827 (-) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64299.57 Da        Isoelectric Point: 4.9253

>NTDB_id=39375 GYMC52_RS12140 WP_012820589.1 2481361..2483082(-) (recN) [Geobacillus sp. Y412MC52]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALELGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTSNCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELKQQLALVTDELLTEAKNVTAVRQTYAQRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=39375 GYMC52_RS12140 WP_012820589.1 2481361..2483082(-) (recN) [Geobacillus sp. Y412MC52]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTCGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCCGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGCGAAATCGAGCAGGCGGCGCTCGAGCTGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCCCTCTCCGGA
GAGGGACGCGGGCTTGATTCGATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGTCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AGTACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTACGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTAAGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTTACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCAGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCCCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGACGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCGATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0TDG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

62.021

100

0.621

Multiple sequence alignment