Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   HP433_RS17340 Genome accession   NZ_CP053723
Coordinates   3589225..3589596 (-) Length   123 a.a.
NCBI ID   WP_106464849.1    Uniprot ID   -
Organism   Escherichia coli strain CP66-6_Sichuan     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3584225..3594596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP433_RS17315 (HP433_17325) decR 3584692..3585150 (-) 459 WP_000884589.1 DNA-binding transcriptional regulator DecR -
  HP433_RS17320 (HP433_17330) cof 3585303..3586121 (-) 819 WP_106464850.1 HMP-PP phosphatase -
  HP433_RS17325 (HP433_17335) ybaE 3586221..3587921 (+) 1701 WP_001238190.1 SgrR family transcriptional regulator -
  HP433_RS17330 (HP433_17340) queC 3587986..3588681 (+) 696 WP_000817229.1 7-cyano-7-deazaguanine synthase QueC -
  HP433_RS17335 (HP433_17345) fadM 3588733..3589131 (-) 399 WP_001194534.1 long-chain acyl-CoA thioesterase FadM -
  HP433_RS17340 (HP433_17350) comE1/comEA 3589225..3589596 (-) 372 WP_106464849.1 helix-hairpin-helix domain-containing protein Machinery gene
  HP433_RS17345 (HP433_17355) ppiD 3589747..3591618 (-) 1872 WP_000969368.1 peptidylprolyl isomerase -
  HP433_RS17350 (HP433_17360) hupB 3591810..3592082 (-) 273 WP_001043542.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 12731.70 Da        Isoelectric Point: 8.9767

>NTDB_id=393749 HP433_RS17340 WP_106464849.1 3589225..3589596(-) (comE1/comEA) [Escherichia coli strain CP66-6_Sichuan]
MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAAQSKAAVPAKASDEEGTRLSINNASAEELARAMNGVG
LKKAQAIVSYREEYGPFKTVEDLKQVPGMGNSLLERNLAVLTL

Nucleotide


Download         Length: 372 bp        

>NTDB_id=393749 HP433_RS17340 WP_106464849.1 3589225..3589596(-) (comE1/comEA) [Escherichia coli strain CP66-6_Sichuan]
ATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCTGTGCCGGAATGTCTCATAGCGCGCTGGCGGCAGC
TTCTGTGGCGAAACCGACGGCGGTAGAAACCAAAGCGGAAGCTCCTGCAGCACAAAGTAAAGCAGCAGTACCGGCGAAAG
CCAGTGACGAAGAAGGCACCCGGCTCAGCATTAATAATGCCAGCGCGGAAGAGCTAGCCCGCGCGATGAATGGCGTTGGC
CTGAAGAAAGCGCAGGCGATTGTCAGTTATCGCGAAGAGTACGGTCCGTTTAAAACGGTGGAGGATCTAAAGCAGGTGCC
GGGGATGGGCAATTCGCTGCTGGAACGTAATCTGGCGGTATTAACCCTGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(60-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

38.793

94.309

0.366