Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HP433_RS09380 Genome accession   NZ_CP053723
Coordinates   1952098..1953525 (-) Length   475 a.a.
NCBI ID   WP_000980597.1    Uniprot ID   -
Organism   Escherichia coli strain CP66-6_Sichuan     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1947098..1958525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP433_RS09350 (HP433_09365) yeeZ 1947153..1947977 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  HP433_RS09355 (HP433_09370) yeeY 1948023..1948952 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HP433_RS09360 (HP433_09375) yoeI 1949167..1949229 (+) 63 WP_010723108.1 membrane protein YoeI -
  HP433_RS09365 (HP433_09380) plaP 1949219..1950577 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HP433_RS09370 (HP433_09385) tsuA 1950756..1951814 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  HP433_RS09375 (HP433_09390) tsuB 1951828..1952055 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HP433_RS09380 (HP433_09395) sbcB 1952098..1953525 (-) 1428 WP_000980597.1 exodeoxyribonuclease I Machinery gene
  HP433_RS09385 (HP433_09400) dacD 1953734..1954900 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HP433_RS09390 (HP433_09405) sbmC 1955019..1955492 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  HP433_RS09395 (HP433_09410) yeeA 1955690..1956748 (+) 1059 WP_001200910.1 FUSC family protein -
  HP433_RS09400 (HP433_09415) tmaR 1956920..1957249 (+) 330 WP_000450409.1 DUF496 family protein -
  HP433_RS09405 (HP433_09420) - 1957350..1957532 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HP433_RS09410 (HP433_09425) - 1957604..1957732 (+) 129 Protein_1859 transposase domain-containing protein -
  HP433_RS09415 (HP433_09430) - 1958021..1958101 (-) 81 Protein_1860 hypothetical protein -
  HP433_RS09420 (HP433_09435) yeeW 1958147..1958326 (-) 180 WP_053902470.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54474.78 Da        Isoelectric Point: 5.4700

>NTDB_id=393728 HP433_RS09380 WP_000980597.1 1952098..1953525(-) (sbcB) [Escherichia coli strain CP66-6_Sichuan]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISLLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=393728 HP433_RS09380 WP_000980597.1 1952098..1953525(-) (sbcB) [Escherichia coli strain CP66-6_Sichuan]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCTATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581