Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HP434_RS16045 Genome accession   NZ_CP053720
Coordinates   3356973..3357578 (-) Length   201 a.a.
NCBI ID   WP_073520263.1    Uniprot ID   -
Organism   Escherichia coli strain CP131_Sichuan     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3351973..3362578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP434_RS16025 (HP434_16030) aes 3352010..3352969 (+) 960 WP_000801848.1 acetyl esterase -
  HP434_RS16030 (HP434_16035) hemH 3352966..3353928 (-) 963 WP_001250088.1 ferrochelatase -
  HP434_RS16035 (HP434_16040) adk 3354164..3354808 (-) 645 WP_001220233.1 adenylate kinase -
  HP434_RS16040 (HP434_16045) htpG 3354989..3356863 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HP434_RS16045 (HP434_16050) recR 3356973..3357578 (-) 606 WP_073520263.1 recombination mediator RecR Machinery gene
  HP434_RS16050 (HP434_16055) ybaB 3357578..3357907 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HP434_RS16055 (HP434_16060) dnaX 3357960..3359891 (-) 1932 WP_094322120.1 DNA polymerase III subunit gamma/tau -
  HP434_RS16060 (HP434_16065) apt 3360020..3360571 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HP434_RS16065 (HP434_16070) ybaN 3360724..3361101 (-) 378 WP_001188905.1 DUF454 family protein -
  HP434_RS16070 (HP434_16075) priC 3361171..3361698 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  HP434_RS16075 (HP434_16080) rsmS 3361712..3361873 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21997.02 Da        Isoelectric Point: 4.9097

>NTDB_id=393669 HP434_RS16045 WP_073520263.1 3356973..3357578(-) (recR) [Escherichia coli strain CP131_Sichuan]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGFDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=393669 HP434_RS16045 WP_073520263.1 3356973..3357578(-) (recR) [Escherichia coli strain CP131_Sichuan]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCTTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443