Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HP434_RS08390 Genome accession   NZ_CP053720
Coordinates   1764524..1765951 (-) Length   475 a.a.
NCBI ID   WP_073849938.1    Uniprot ID   -
Organism   Escherichia coli strain CP131_Sichuan     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759524..1770951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP434_RS08360 (HP434_08360) yeeZ 1759579..1760403 (+) 825 WP_129930995.1 SDR family oxidoreductase -
  HP434_RS08365 (HP434_08365) yeeY 1760449..1761378 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HP434_RS08370 (HP434_08370) yoeI 1761593..1761655 (+) 63 WP_010723108.1 membrane protein YoeI -
  HP434_RS08375 (HP434_08375) plaP 1761645..1763003 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HP434_RS08380 (HP434_08380) tsuA 1763182..1764240 (+) 1059 WP_172615274.1 thiosulfate utilization transporter TsuA/YeeE -
  HP434_RS08385 (HP434_08385) tsuB 1764254..1764481 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HP434_RS08390 (HP434_08390) sbcB 1764524..1765951 (-) 1428 WP_073849938.1 exodeoxyribonuclease I Machinery gene
  HP434_RS08395 (HP434_08395) dacD 1766160..1767326 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HP434_RS08400 (HP434_08400) sbmC 1767444..1767917 (+) 474 WP_001105384.1 DNA gyrase inhibitor SbmC -
  HP434_RS08405 (HP434_08405) yeeA 1768116..1769174 (+) 1059 WP_001200891.1 FUSC family protein -
  HP434_RS08410 (HP434_08410) tmaR 1769346..1769675 (+) 330 WP_000450409.1 DUF496 family protein -
  HP434_RS08415 (HP434_08415) - 1769880..1770890 (+) 1011 Protein_1657 IS3 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54470.79 Da        Isoelectric Point: 5.4720

>NTDB_id=393648 HP434_RS08390 WP_073849938.1 1764524..1765951(-) (sbcB) [Escherichia coli strain CP131_Sichuan]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFVEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=393648 HP434_RS08390 WP_073849938.1 1764524..1765951(-) (sbcB) [Escherichia coli strain CP131_Sichuan]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCTCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGTGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTACATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTAGCGATATTCGTGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581