Detailed information NTG0393617

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FIU99_RS14025
• Genome accession: NZ_CP045355
• Coordinates: 3035949..3036932 (-)
• Length: 327 a.a.
• NCBI ID: WP_006958149.1
• Uniprot ID: A0A097AVA5
• Organism: Vibrio sp. THAF64
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3030949..3041932

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU99_RS14000 (FIU99_14070)	rimM	3031058..3031606 (-)	549	WP_006958145.1	ribosome maturation factor RimM	-
FIU99_RS14005 (FIU99_14075)	rpsP	3031636..3031884 (-)	249	WP_005438039.1	30S ribosomal protein S16	-
FIU99_RS14010 (FIU99_14080)	ffh	3032093..3033484 (-)	1392	WP_006958146.1	signal recognition particle protein	-
FIU99_RS14015 (FIU99_14085)	-	3033690..3034484 (+)	795	WP_038164050.1	inner membrane protein YpjD	-
FIU99_RS14020 (FIU99_14090)	-	3034607..3035881 (+)	1275	WP_006958148.1	HlyC/CorC family transporter	-
FIU99_RS14025 (FIU99_14095)	rpoS	3035949..3036932 (-)	984	WP_006958149.1	RNA polymerase sigma factor RpoS	Regulator
FIU99_RS14030 (FIU99_14100)	nlpD	3036999..3037910 (-)	912	WP_006958150.1	murein hydrolase activator NlpD	-
FIU99_RS14035 (FIU99_14105)	-	3037913..3038539 (-)	627	WP_006958151.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FIU99_RS14040 (FIU99_14110)	surE	3038542..3039285 (-)	744	WP_172845461.1	5'/3'-nucleotidase SurE	-
FIU99_RS14045 (FIU99_14115)	truD	3039297..3040343 (-)	1047	WP_006958153.1	tRNA pseudouridine(13) synthase TruD	-
FIU99_RS14050 (FIU99_14120)	ispF	3040390..3040869 (-)	480	WP_019277514.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FIU99_RS14055 (FIU99_14125)	ispD	3040873..3041577 (-)	705	WP_043009251.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FIU99_RS14060 (FIU99_14130)	ftsB	3041580..3041858 (-)	279	WP_006958167.1	cell division protein FtsB	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37396.39 Da
• Isoelectric Point: 4.7232

>NTDB_id=393617 FIU99_RS14025 WP_006958149.1 3035949..3036932(-) (rpoS) [Vibrio sp. THAF64]
MSISNTATKVEEFELEPTMESIQANGLTTANRTQAEDAKEEFDASTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIATQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSMNEE

Nucleotide

• Length: 984 bp

>NTDB_id=393617 FIU99_RS14025 WP_006958149.1 3035949..3036932(-) (rpoS) [Vibrio sp. THAF64]
ATGAGTATCAGCAATACAGCAACGAAAGTCGAAGAGTTCGAGCTTGAACCAACAATGGAATCGATTCAGGCAAACGGGCT
TACTACCGCCAACCGCACCCAAGCAGAGGACGCCAAAGAGGAGTTTGACGCTTCCACAAAAAGCTTGGATGCCACTCAAC
TTTACTTGGGAGAAATTGGTTTCTCTCCACTACTCACCGCAGAAGAAGAAGTTTTGTACGCTCGCCGTGCCCTAAGAGGT
GATGAAGCTGCGCGTAAACGAATGATTGAAAGTAATCTTCGCTTAGTGGTGAAAATTTCCCGTCGATACAGCAACCGTGG
GCTTGCTCTGCTTGATCTGATTGAAGAAGGCAACTTAGGCTTGATTCGCGCGGTTGAAAAGTTTGACCCAGAGAGAGGAT
TCCGGTTCTCGACCTATGCTACATGGTGGATCCGTCAAACGATTGAACGTGCTTTGATGAATCAAACTCGCACCATACGT
TTGCCTATTCATGTGGTCAAAGAACTGAACATCTATCTGCGTACTGCTCGTGAGTTATCACAGAAGCTGGACCATGAACC
AACAGCAGAAGAGATTGCTACACAACTCGACAAGCCAGTCGACGATGTCAGCAAGATGCTACGCCTCAACGAACGAATTA
GTTCTGTAGACACCCCTATCGGTGGTGATGGTGAAAAAGCACTGCTAGATATTATTCCTGATGTGAACAACTCTGATCCT
GAAGTGTCCACACAAGACGATGATATCAAATCTTCATTGATCCATTGGTTGGATGAACTGAATCCTAAGCAGAAAGAAGT
CTTAGCACGTCGTTTTGGATTATTGGGCTACGAGCCGTCAACACTGGAAGAAGTAGGACGTGAAATTAACCTAACTCGTG
AACGTGTTCGTCAGATTCAGGTTGAAGGCCTACGTCGTTTAAGAGAGATCCTGATCAAACAAGGTCTGAACATGGAAAGC
CTGTTCAGCATGAACGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

3D structure

• AlphaFold DB: A0A097AVA5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.988	100	0.85