Detailed information NTG0393608

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: FIU99_RS07380
• Genome accession: NZ_CP045355
• Coordinates: 1578109..1579533 (-)
• Length: 474 a.a.
• NCBI ID: WP_006962037.1
• Uniprot ID: A0AAJ4AFA0
• Organism: Vibrio sp. THAF64
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1573109..1584533

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIU99_RS07360 (FIU99_07360)	-	1574523..1575725 (+)	1203	WP_031343039.1	HD-GYP domain-containing protein	-
FIU99_RS07365 (FIU99_07365)	cdd	1575780..1576667 (-)	888	WP_043007793.1	cytidine deaminase	-
FIU99_RS07370 (FIU99_07370)	-	1576921..1577598 (-)	678	WP_006962033.1	CidB/LrgB family autolysis modulator	-
FIU99_RS07375 (FIU99_07375)	-	1577598..1577963 (-)	366	WP_006962035.1	CidA/LrgA family protein	-
FIU99_RS07380 (FIU99_07380)	sbcB	1578109..1579533 (-)	1425	WP_006962037.1	exodeoxyribonuclease I	Machinery gene
FIU99_RS07385 (FIU99_07385)	-	1579673..1581046 (-)	1374	WP_006962038.1	L-cystine transporter	-
FIU99_RS07390 (FIU99_07390)	-	1581238..1581924 (-)	687	WP_006962039.1	NAD(P)H-binding protein	-
FIU99_RS07395 (FIU99_07395)	-	1582450..1583061 (+)	612	WP_039952349.1	flavin reductase family protein	-
FIU99_RS07400 (FIU99_07400)	cobT	1583068..1584096 (+)	1029	WP_006962041.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54713.02 Da
• Isoelectric Point: 5.0914

>NTDB_id=393608 FIU99_RS07380 WP_006962037.1 1578109..1579533(-) (sbcB) [Vibrio sp. THAF64]
MQQAHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQKAASKGLPEP
EFITKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENEEGFI
SFKLEHLSVANGIEHENAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNELVDIVNMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQHPEIREKLNSLYSIEREYEKSDDVDTMLYDGFFSPAAKQSMDIIRETEPKNLSALDISFSDD
RIAPLLFRYRARHFPWTLDESEQQKWAAHSREYFESRIEDYMLNLENLVHEHESDEKKIAILKSVYQYVQKLVS

Nucleotide

• Length: 1425 bp

>NTDB_id=393608 FIU99_RS07380 WP_006962037.1 1578109..1579533(-) (sbcB) [Vibrio sp. THAF64]
ATGCAACAAGCGCATCAACCTACGTTTTTCTTCTTCGATTATGAAACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
CCAGTTTGCGGGTGTACGCACCGACATGGATTTCAATATCATCGGTGAGCCTCTTGTTATCTACTGCCAACCGCCTTCAG
ATTATCTTCCATCACCCGAAGCCGCGCTTATCACTGGTATCACACCTCAGAAGGCGGCAAGTAAAGGGTTACCTGAGCCG
GAATTTATTACCAAAATTCATGAGCAGTTGTCCACGCCAAACACCATCAACTTGGGTTACAATAGCATTCGATTTGATGA
CGAAGTGACGCGATATACCTGTTACCGAAATTTCATCGATCCGTATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTCGATGTCATGCGCGCCTGTCACGCCCTTCGCCCAGAAGGTATTAATTGGCCAGAGAATGAAGAAGGTTTTATC
AGCTTTAAGCTAGAGCACTTGTCCGTTGCCAATGGCATTGAGCACGAGAATGCACACGATGCGATGGCTGACGTTATAGC
AACGATTGAAATGGCTAAAAAGGTGAAAGCCGCTCAGCCTAAGCTCTTTGATTATTTCCTTAGCATGCGCCACAAGCGCA
AACTGAACGAACTCGTCGATATCGTGAATATGACACCGCTTATGCACGTATCGGGTATGCTGGGGCGCGAATGCAATTAC
ACTAGCTGGGTGGTTCCGGTCGCTTGGCATCCAACCAACCAGAATGCGGTGATTGTTGTCGATTTAGCGAAAGACCCGCA
GCCGTTGTTGGATTTAGATGTAGAACAACTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCATCTCAACAAGTGCCCTATTTTAGCTCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAATGCTTACAAAACCTTGAGCGACTAAGACAGCACCCTGAGATTAGAGAAAAACTCAA
TTCGCTATACAGTATCGAGAGAGAATACGAAAAGAGCGATGATGTTGATACTATGCTTTACGATGGTTTCTTCTCTCCTG
CGGCAAAGCAATCAATGGATATCATACGAGAAACTGAACCAAAGAATCTTTCCGCCCTTGATATCTCATTCAGTGACGAC
AGAATTGCTCCGCTTCTGTTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGATGAGAGTGAACAACAAAAATGGGC
AGCACACAGCCGCGAATACTTCGAAAGTCGAATAGAAGACTACATGTTGAATTTGGAAAACTTAGTTCACGAGCATGAGA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTTCAAAAGCTAGTATCTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.07	99.789	0.789