Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | FIU99_RS04785 | Genome accession | NZ_CP045355 |
| Coordinates | 1045029..1045328 (+) | Length | 99 a.a. |
| NCBI ID | WP_019277884.1 | Uniprot ID | A0A1V0I6C0 |
| Organism | Vibrio sp. THAF64 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1040029..1050328
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIU99_RS04770 (FIU99_04800) | lon | 1040040..1042391 (+) | 2352 | WP_021457152.1 | endopeptidase La | - |
| FIU99_RS04775 (FIU99_04805) | - | 1042584..1042856 (+) | 273 | WP_004414742.1 | HU family DNA-binding protein | - |
| FIU99_RS04780 (FIU99_04810) | ppiD | 1043030..1044889 (+) | 1860 | WP_006959344.1 | peptidylprolyl isomerase | - |
| FIU99_RS04785 (FIU99_04815) | comEA | 1045029..1045328 (+) | 300 | WP_019277884.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FIU99_RS04790 (FIU99_04820) | cmk | 1045469..1046149 (+) | 681 | WP_006959340.1 | (d)CMP kinase | - |
| FIU99_RS04795 (FIU99_04825) | rpsA | 1046253..1047923 (+) | 1671 | WP_006959338.1 | 30S ribosomal protein S1 | - |
| FIU99_RS04800 (FIU99_04830) | ihfB | 1048134..1048415 (+) | 282 | WP_006959336.1 | integration host factor subunit beta | - |
| FIU99_RS04805 (FIU99_04835) | - | 1048554..1048835 (+) | 282 | WP_006959333.1 | LapA family protein | - |
| FIU99_RS04810 (FIU99_04840) | lapB | 1048861..1050030 (+) | 1170 | WP_006959331.1 | lipopolysaccharide assembly protein LapB | - |
Sequence
Protein
Download Length: 99 a.a. Molecular weight: 10588.39 Da Isoelectric Point: 6.2913
>NTDB_id=393606 FIU99_RS04785 WP_019277884.1 1045029..1045328(+) (comEA) [Vibrio sp. THAF64]
MLRILWTSLLMVLAVYSPTTVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLA
LVKGIGPALIDKNLSRIKL
MLRILWTSLLMVLAVYSPTTVSAEKTTNSEYAGIEITVNVNTAEAAELAALLTGVGAKKAEAIVQYRDENGPFLKVTDLA
LVKGIGPALIDKNLSRIKL
Nucleotide
Download Length: 300 bp
>NTDB_id=393606 FIU99_RS04785 WP_019277884.1 1045029..1045328(+) (comEA) [Vibrio sp. THAF64]
ATGCTACGCATACTTTGGACGAGTCTTTTAATGGTGCTCGCGGTATATAGCCCAACTACTGTATCGGCTGAAAAAACCAC
CAACTCAGAATACGCTGGAATAGAGATTACAGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTG
GTGTTGGTGCGAAAAAAGCTGAGGCTATTGTTCAATATAGGGACGAAAACGGTCCCTTTTTGAAGGTGACTGATTTGGCT
TTGGTTAAAGGTATTGGCCCCGCTTTAATAGACAAAAACCTCAGTCGTATAAAGTTGTAA
ATGCTACGCATACTTTGGACGAGTCTTTTAATGGTGCTCGCGGTATATAGCCCAACTACTGTATCGGCTGAAAAAACCAC
CAACTCAGAATACGCTGGAATAGAGATTACAGTGAATGTTAATACGGCTGAAGCGGCTGAATTAGCGGCGCTACTAACTG
GTGTTGGTGCGAAAAAAGCTGAGGCTATTGTTCAATATAGGGACGAAAACGGTCCCTTTTTGAAGGTGACTGATTTGGCT
TTGGTTAAAGGTATTGGCCCCGCTTTAATAGACAAAAACCTCAGTCGTATAAAGTTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
52.747 |
91.919 |
0.485 |
| comEA | Vibrio campbellii strain DS40M4 |
51.648 |
91.919 |
0.475 |
| comEA | Vibrio cholerae C6706 |
53.571 |
84.848 |
0.455 |
| comEA | Vibrio cholerae strain A1552 |
53.571 |
84.848 |
0.455 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
39.091 |
100 |
0.434 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
38.679 |
100 |
0.414 |