Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | FIV01_RS12305 | Genome accession | NZ_CP045350 |
| Coordinates | 2674577..2675560 (-) | Length | 327 a.a. |
| NCBI ID | WP_152431259.1 | Uniprot ID | A0A5P9CLR9 |
| Organism | Vibrio aquimaris strain THAF100 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2669577..2680560
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV01_RS12280 (FIV01_12410) | rimM | 2669700..2670248 (-) | 549 | WP_114784894.1 | ribosome maturation factor RimM | - |
| FIV01_RS12285 (FIV01_12415) | rpsP | 2670278..2670526 (-) | 249 | WP_005438039.1 | 30S ribosomal protein S16 | - |
| FIV01_RS12290 (FIV01_12420) | ffh | 2670752..2672122 (-) | 1371 | WP_152431256.1 | signal recognition particle protein | - |
| FIV01_RS12295 (FIV01_12425) | - | 2672330..2673124 (+) | 795 | WP_152431257.1 | inner membrane protein YpjD | - |
| FIV01_RS12300 (FIV01_12430) | - | 2673247..2674521 (+) | 1275 | WP_152431258.1 | CNNM domain-containing protein | - |
| FIV01_RS12305 (FIV01_12435) | rpoS | 2674577..2675560 (-) | 984 | WP_152431259.1 | RNA polymerase sigma factor RpoS | Regulator |
| FIV01_RS12310 (FIV01_12440) | - | 2675624..2676541 (-) | 918 | WP_152431260.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| FIV01_RS12315 (FIV01_12445) | - | 2676544..2677170 (-) | 627 | WP_152431261.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| FIV01_RS12320 (FIV01_12450) | surE | 2677167..2677931 (-) | 765 | WP_172971834.1 | 5'/3'-nucleotidase SurE | - |
| FIV01_RS12325 (FIV01_12455) | truD | 2677928..2678974 (-) | 1047 | WP_152431262.1 | tRNA pseudouridine(13) synthase TruD | - |
| FIV01_RS12330 (FIV01_12460) | ispF | 2679026..2679502 (-) | 477 | WP_152431263.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| FIV01_RS12335 (FIV01_12465) | ispD | 2679506..2680207 (-) | 702 | WP_152431264.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| FIV01_RS12340 (FIV01_12470) | ftsB | 2680210..2680488 (-) | 279 | WP_152431265.1 | cell division protein FtsB | - |
Sequence
Protein
Download Length: 327 a.a. Molecular weight: 37273.16 Da Isoelectric Point: 4.5306
>NTDB_id=393577 FIV01_RS12305 WP_152431259.1 2674577..2675560(-) (rpoS) [Vibrio aquimaris strain THAF100]
MSISNTATKVEEFELEAEMEAIQADDSTTTGSARAEDAKEDFDVSTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIALQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSINEE
MSISNTATKVEEFELEAEMEAIQADDSTTTGSARAEDAKEDFDVSTKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIALQLDKPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDVNNSDP
EVSTQDDDIKSSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILIKQGLNMES
LFSINEE
Nucleotide
Download Length: 984 bp
>NTDB_id=393577 FIV01_RS12305 WP_152431259.1 2674577..2675560(-) (rpoS) [Vibrio aquimaris strain THAF100]
ATGAGTATCAGTAACACAGCAACGAAAGTCGAAGAGTTTGAGCTTGAAGCAGAAATGGAAGCGATTCAGGCTGATGATTC
CACAACCACGGGCAGTGCCCGAGCCGAGGATGCAAAAGAAGACTTTGATGTATCTACCAAAAGCTTGGATGCGACCCAAC
TTTATTTAGGAGAAATAGGTTTTTCACCTCTGCTCACCGCAGAAGAAGAGGTACTATATGCTCGTCGTGCTCTGAGAGGA
GACGAAGCAGCTCGTAAACGTATGATTGAAAGTAATCTTCGTTTAGTGGTGAAAATATCCCGTCGATACGGTAACCGTGG
TCTCGCGTTACTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATCCGAGCGGTCGAAAAATTTGACCCAGAGAGAGGTT
TTCGCTTTTCAACTTACGCAACATGGTGGATAAGACAAACCATTGAGCGTGCTTTGATGAATCAGACTCGGACTATACGT
TTGCCTATTCACGTCGTGAAAGAGCTTAACATCTATTTACGTACAGCCAGAGAGCTTTCTCAAAAACTTGATCATGAGCC
AACAGCAGAAGAGATCGCACTTCAACTAGATAAGCCAGTCGATGATGTCAGTAAGATGCTGCGTCTTAATGAGCGCATCA
GTTCAGTCGACACTCCAATTGGTGGAGATGGTGAGAAAGCACTGCTTGATATCATTCCTGATGTAAACAATTCAGACCCC
GAAGTTTCTACTCAGGATGATGATATCAAGTCTTCATTGATTGATTGGCTTGACGAGTTAAACCCAAAACAAAAAGAGGT
CCTCGCACGTCGGTTTGGACTATTGGGGTATGAGCCTTCAACTTTAGAGGAAGTTGGGCGTGAGATTAACCTTACTCGAG
AAAGGGTAAGACAAATACAGGTTGAAGGTTTGCGTCGCCTAAGAGAAATCCTGATTAAGCAGGGCCTCAACATGGAGAGT
CTATTCAGTATTAATGAAGAGTAG
ATGAGTATCAGTAACACAGCAACGAAAGTCGAAGAGTTTGAGCTTGAAGCAGAAATGGAAGCGATTCAGGCTGATGATTC
CACAACCACGGGCAGTGCCCGAGCCGAGGATGCAAAAGAAGACTTTGATGTATCTACCAAAAGCTTGGATGCGACCCAAC
TTTATTTAGGAGAAATAGGTTTTTCACCTCTGCTCACCGCAGAAGAAGAGGTACTATATGCTCGTCGTGCTCTGAGAGGA
GACGAAGCAGCTCGTAAACGTATGATTGAAAGTAATCTTCGTTTAGTGGTGAAAATATCCCGTCGATACGGTAACCGTGG
TCTCGCGTTACTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATCCGAGCGGTCGAAAAATTTGACCCAGAGAGAGGTT
TTCGCTTTTCAACTTACGCAACATGGTGGATAAGACAAACCATTGAGCGTGCTTTGATGAATCAGACTCGGACTATACGT
TTGCCTATTCACGTCGTGAAAGAGCTTAACATCTATTTACGTACAGCCAGAGAGCTTTCTCAAAAACTTGATCATGAGCC
AACAGCAGAAGAGATCGCACTTCAACTAGATAAGCCAGTCGATGATGTCAGTAAGATGCTGCGTCTTAATGAGCGCATCA
GTTCAGTCGACACTCCAATTGGTGGAGATGGTGAGAAAGCACTGCTTGATATCATTCCTGATGTAAACAATTCAGACCCC
GAAGTTTCTACTCAGGATGATGATATCAAGTCTTCATTGATTGATTGGCTTGACGAGTTAAACCCAAAACAAAAAGAGGT
CCTCGCACGTCGGTTTGGACTATTGGGGTATGAGCCTTCAACTTTAGAGGAAGTTGGGCGTGAGATTAACCTTACTCGAG
AAAGGGTAAGACAAATACAGGTTGAAGGTTTGCGTCGCCTAAGAGAAATCCTGATTAAGCAGGGCCTCAACATGGAGAGT
CTATTCAGTATTAATGAAGAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
83.988 |
100 |
0.85 |