Detailed information NTG0393556

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FIV01_RS00990
• Genome accession: NZ_CP045350
• Coordinates: 213337..214344 (+)
• Length: 335 a.a.
• NCBI ID: WP_152429348.1
• Uniprot ID: -
• Organism: Vibrio aquimaris strain THAF100
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 208337..219344

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIV01_RS00970 (FIV01_00980)	metJ	208419..208739 (+)	321	WP_152429345.1	met regulon transcriptional regulator MetJ	-
FIV01_RS00975 (FIV01_00985)	-	208876..210150 (-)	1275	WP_152429346.1	malic enzyme-like NAD(P)-binding protein	-
FIV01_RS00980 (FIV01_00990)	rpmE	210390..210608 (-)	219	WP_114785970.1	50S ribosomal protein L31	-
FIV01_RS00985 (FIV01_00995)	priA	210893..213091 (+)	2199	WP_152429347.1	primosomal protein N'	-
FIV01_RS00990 (FIV01_01000)	cytR	213337..214344 (+)	1008	WP_152429348.1	DNA-binding transcriptional regulator CytR	Regulator
FIV01_RS00995 (FIV01_01005)	ftsN	214528..215061 (+)	534	WP_152429349.1	cell division protein FtsN	-
FIV01_RS01000 (FIV01_01010)	hslV	215293..215835 (+)	543	WP_152429350.1	ATP-dependent protease subunit HslV	-
FIV01_RS01005 (FIV01_01015)	hslU	215873..217204 (+)	1332	WP_152429351.1	HslU--HslV peptidase ATPase subunit	-
FIV01_RS01010 (FIV01_01020)	-	217384..218067 (+)	684	WP_152429352.1	nitroreductase family protein	-
FIV01_RS01015 (FIV01_01025)	frdD	218133..218510 (-)	378	WP_152429353.1	fumarate reductase subunit FrdD	-
FIV01_RS01020 (FIV01_01030)	frdC	218523..218906 (-)	384	WP_152429354.1	fumarate reductase subunit FrdC	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36988.54 Da
• Isoelectric Point: 6.5988

>NTDB_id=393556 FIV01_RS00990 WP_152429348.1 213337..214344(+) (cytR) [Vibrio aquimaris strain THAF100]
MATMKDVAQLAGVSTATVSRALMNPEKVSSATRKRVEDAVLEAGYSPNSLARNLRRNESKTIIAIIPDICDPYYTEIIRG
IEDAAVEHGYIVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRIAQVSGPESAVLCQFRHQGYQQALRRAGITMNPNYCIQGRFSFEDGSKAIRQLLSLPEPPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSVVGFDDIHFAQYCDPPLTTISQPRYEIGRQAMLMMLDLLRGHDVRAGSRLLE
TQLVVRDSVAPPRSC

Nucleotide

• Length: 1008 bp

>NTDB_id=393556 FIV01_RS00990 WP_152429348.1 213337..214344(+) (cytR) [Vibrio aquimaris strain THAF100]
ATGGCGACAATGAAGGATGTTGCTCAGCTGGCTGGCGTTTCAACTGCGACTGTATCGCGTGCGCTAATGAATCCGGAAAA
AGTATCTTCAGCCACAAGGAAGCGAGTCGAGGATGCGGTGTTAGAGGCAGGGTATTCACCTAATTCTCTAGCACGTAATT
TACGTAGAAATGAATCTAAAACCATCATCGCGATTATTCCTGATATCTGCGATCCGTATTATACCGAGATTATTCGAGGT
ATTGAGGATGCGGCTGTGGAGCATGGTTATATCGTGTTACTTGGCGACAGCGGACAACAGAAAAAACGCGAAAGTTCTTT
TGTTAATTTAGTCTTTACCAAGCAAGCCGATGGCATGTTACTGCTTGGTACTGACTTACCTTTTGATGTGAGTAAACCAG
AGCAAAAAAACTTGCCTCCTATGGTGATGGCATGTGAATTTGCCCCTGAGCTTGAGCTACCAACCGTACATATCGACAAT
CTTACTTCGGCTTTTGAAGCGGTAAACTATTTGACTCAAATGGGTCATAAACGAATTGCTCAGGTTTCTGGTCCAGAATC
GGCTGTCTTATGTCAGTTCCGCCATCAAGGTTATCAACAAGCACTCCGCCGGGCTGGGATCACGATGAACCCAAACTATT
GCATTCAAGGCCGTTTTTCTTTTGAAGATGGGTCTAAGGCCATCAGGCAGCTACTGTCTCTTCCTGAGCCGCCGACTGCT
ATTTTTTGCCATAATGATGCGATGGCAATCGGGGCGATTCAAGAGGCGAAAAAATTAGGTTTGCGAGTTCCTCAAGATTT
GTCTGTGGTAGGCTTTGATGATATTCACTTCGCTCAATATTGCGATCCACCATTAACGACGATTTCTCAGCCACGTTATG
AGATAGGCCGTCAAGCTATGTTGATGATGTTGGATCTCTTGCGAGGTCACGATGTTCGTGCGGGTTCACGACTGCTTGAG
ACTCAATTAGTCGTGAGAGACAGTGTCGCTCCGCCAAGAAGTTGCTAG

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	90.361	99.104	0.896
cytR	Vibrio parahaemolyticus RIMD 2210633	87.988	99.403	0.875