Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GYMC52_RS00550 Genome accession   NC_014915
Coordinates   101978..103351 (+) Length   457 a.a.
NCBI ID   WP_013143974.1    Uniprot ID   -
Organism   Geobacillus sp. Y412MC52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 96978..108351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYMC52_RS00530 (GYMC52_0077) - 97349..97810 (+) 462 WP_012820466.1 CtsR family transcriptional regulator -
  GYMC52_RS00535 (GYMC52_0078) - 97826..98374 (+) 549 WP_012820467.1 UvrB/UvrC motif-containing protein -
  GYMC52_RS00540 (GYMC52_0079) - 98380..99471 (+) 1092 WP_012820468.1 protein arginine kinase -
  GYMC52_RS00545 (GYMC52_0080) clpC 99468..101900 (+) 2433 WP_012820469.1 ATP-dependent protease ATP-binding subunit ClpC -
  GYMC52_RS00550 (GYMC52_0081) radA 101978..103351 (+) 1374 WP_013143974.1 DNA repair protein RadA Machinery gene
  GYMC52_RS00555 (GYMC52_0082) - 103660..104754 (+) 1095 WP_012820471.1 PIN/TRAM domain-containing protein -
  GYMC52_RS00560 (GYMC52_0083) ispD 104776..105462 (+) 687 WP_012820472.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GYMC52_RS00565 (GYMC52_0084) ispF 105477..105953 (+) 477 WP_012820473.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GYMC52_RS00570 (GYMC52_0085) gltX 106155..107627 (+) 1473 WP_011229598.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49473.14 Da        Isoelectric Point: 7.8885

>NTDB_id=39355 GYMC52_RS00550 WP_013143974.1 101978..103351(+) (radA) [Geobacillus sp. Y412MC52]
MAKKKTKFVCQECGYESAKWLGRCPGCQTWNSLVEEIEQEKPTVRGAFLHSERAGSAKPVPITAVEAVQEPRMKTNSAEL
DRVLGGGIVKGSLVLIGGDPGIGKSTLLLQTSAQLAAAGHQVLYVSGEESVKQVKLRAGRLRAECDRLYVLAEADLEYIV
AAVETVQPACVIIDSIQTVYRTDISSAPGSVAQVRECTAELMKLAKTKGIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYF
EGERHHTYRILRAVKNRFGSTNEIGIFEMRDIGLKEVENPSEVFLEERSRGAAGSTVVAAMEGTRPVLVEIQALVSPTSF
GNPRRMATGLDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDRPTNPADVIIGEVGLT
GEVRRVSRIEQRVQEAVKLGFSRIIVPKNNLAGWQPPKGVQVIGVSHVAEALEHTMC

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=39355 GYMC52_RS00550 WP_013143974.1 101978..103351(+) (radA) [Geobacillus sp. Y412MC52]
ATGGCGAAGAAGAAAACGAAGTTCGTTTGCCAAGAGTGTGGATATGAGTCGGCCAAATGGCTTGGACGCTGTCCGGGATG
CCAAACATGGAATTCGCTTGTTGAGGAAATTGAGCAGGAGAAACCGACTGTGCGCGGCGCATTTCTTCATTCGGAGCGGG
CGGGTTCGGCCAAACCGGTCCCGATTACAGCCGTGGAGGCGGTGCAAGAGCCGCGCATGAAAACGAACAGCGCGGAGCTC
GATCGCGTGTTGGGCGGTGGAATCGTCAAAGGTTCGCTCGTTTTGATCGGCGGCGACCCTGGCATTGGCAAATCAACGTT
GCTTTTGCAAACATCGGCGCAGCTGGCCGCCGCTGGGCATCAAGTGCTGTATGTCTCCGGTGAGGAATCGGTCAAACAAG
TAAAGCTGCGCGCTGGACGCCTTCGTGCGGAGTGCGATCGGCTGTACGTGTTGGCGGAAGCAGATTTGGAATACATTGTG
GCAGCGGTTGAAACGGTTCAACCTGCTTGTGTCATCATTGATTCGATTCAGACGGTGTATCGCACCGATATTTCCTCTGC
ACCGGGCAGCGTCGCCCAAGTGCGCGAATGCACGGCCGAGCTGATGAAGCTGGCGAAAACAAAAGGCATTGCCATTTTTA
TCGTCGGTCATGTGACGAAGGAAGGGGCGATCGCCGGGCCGCGCCTGCTCGAACATATGGTGGACACCGTTCTCTATTTT
GAAGGGGAGCGACACCATACGTATCGCATTTTGCGAGCGGTGAAAAACCGTTTTGGCTCAACGAACGAAATCGGCATTTT
TGAGATGCGCGACATTGGGCTGAAGGAAGTGGAAAACCCATCAGAAGTGTTTTTAGAAGAACGGTCGCGCGGAGCGGCTG
GCTCGACGGTCGTGGCGGCGATGGAAGGGACGCGGCCGGTGCTCGTGGAAATCCAGGCGCTCGTCTCGCCGACGAGCTTC
GGCAACCCGAGACGGATGGCGACCGGCCTTGACCATAACCGTGTGTCGCTTTTGATGGCCGTGCTCGAAAAGCGGGTTGG
GCTGCTGTTGCAAAACCAAGATGCTTATTTGAAAGTGGCGGGCGGCGTGAAGCTTGATGAGCCGGCAATTGACTTGGCGG
TCGCTGTCAGCATCGCCTCGAGCTTTCGCGATCGGCCGACGAATCCGGCGGATGTCATTATCGGCGAAGTCGGCTTAACT
GGAGAGGTGCGCCGCGTCTCGCGCATCGAACAGCGCGTGCAGGAGGCGGTAAAATTAGGCTTTTCCCGCATTATTGTGCC
AAAAAACAATTTAGCTGGCTGGCAGCCGCCAAAAGGTGTGCAAGTGATCGGTGTTTCGCATGTGGCCGAGGCGCTTGAGC
ATACAATGTGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.961

100

0.74
  radA Streptococcus mitis NCTC 12261

65.563

99.125

0.65
  radA Streptococcus mitis SK321

65.563

99.125

0.65
  radA Streptococcus pneumoniae Rx1

65.563

99.125

0.65
  radA Streptococcus pneumoniae D39

65.563

99.125

0.65
  radA Streptococcus pneumoniae R6

65.563

99.125

0.65
  radA Streptococcus pneumoniae TIGR4

65.563

99.125

0.65

Multiple sequence alignment