Detailed information NTG0393546

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPT09_RS16265
• Genome accession: NZ_CP053706
• Coordinates: 3533752..3534756 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PAC1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3528752..3539756

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPT09_RS16250 (HPT09_16255)	-	3529236..3530242 (+)	1007	Protein_3239	TolB family protein	-
HPT09_RS16255 (HPT09_16260)	mutS	3530368..3532935 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
HPT09_RS16260 (HPT09_16265)	fdxA	3533002..3533325 (+)	324	WP_003119354.1	ferredoxin FdxA	-
HPT09_RS16265 (HPT09_16270)	rpoS	3533752..3534756 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HPT09_RS16270 (HPT09_16275)	-	3534861..3535753 (-)	893	Protein_3243	peptidoglycan DD-metalloendopeptidase family protein	-
HPT09_RS16275 (HPT09_16280)	-	3535799..3536434 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPT09_RS16280 (HPT09_16285)	surE	3536467..3537216 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HPT09_RS16285 (HPT09_16290)	truD	3537204..3538271 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
HPT09_RS16290 (HPT09_16295)	ispF	3538268..3538741 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPT09_RS16295 (HPT09_16300)	fghA	3538812..3539663 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=393546 HPT09_RS16265 WP_003113871.1 3533752..3534756(-) (rpoS) [Pseudomonas aeruginosa strain PAC1]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=393546 HPT09_RS16265 WP_003113871.1 3533752..3534756(-) (rpoS) [Pseudomonas aeruginosa strain PAC1]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653