Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HPT09_RS13730 Genome accession   NZ_CP053706
Coordinates   2993496..2993825 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain PAC1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2988496..2998825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT09_RS13715 (HPT09_13720) uvrB 2989883..2991895 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  HPT09_RS13720 (HPT09_13725) - 2992083..2993279 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  HPT09_RS13730 (HPT09_13735) comEA/comE1 2993496..2993825 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  HPT09_RS13735 (HPT09_13740) - 2994016..2996013 (-) 1998 WP_010895647.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  HPT09_RS13740 (HPT09_13745) - 2996578..2997684 (-) 1107 Protein_2738 IS3 family transposase -
  HPT09_RS13745 (HPT09_13750) - 2997762..2998779 (-) 1018 Protein_2739 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=393541 HPT09_RS13730 WP_003104586.1 2993496..2993825(-) (comEA/comE1) [Pseudomonas aeruginosa strain PAC1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=393541 HPT09_RS13730 WP_003104586.1 2993496..2993825(-) (comEA/comE1) [Pseudomonas aeruginosa strain PAC1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385