Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   HPT09_RS13020 Genome accession   NZ_CP053706
Coordinates   2837246..2837860 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain PAC1     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2832246..2842860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT09_RS13000 (HPT09_13005) - 2833675..2834304 (+) 630 WP_003091190.1 CsiV family protein -
  HPT09_RS13005 (HPT09_13010) - 2834350..2835087 (-) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  HPT09_RS13010 (HPT09_13015) nagZ 2835099..2836097 (-) 999 WP_003118092.1 beta-N-acetylhexosaminidase -
  HPT09_RS13015 (HPT09_13020) psrA 2836313..2837014 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  HPT09_RS13020 (HPT09_13025) dinR/lexA 2837246..2837860 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  HPT09_RS13025 (HPT09_13030) sulA 2837872..2838357 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  HPT09_RS13030 (HPT09_13035) - 2838379..2838612 (-) 234 WP_003109483.1 hypothetical protein -
  HPT09_RS13035 (HPT09_13040) - 2838818..2839336 (-) 519 WP_003113979.1 DUF6586 family protein -
  HPT09_RS13040 (HPT09_13045) topA 2839443..2842049 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  HPT09_RS13045 (HPT09_13050) - 2842140..2842403 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=393536 HPT09_RS13020 WP_003091196.1 2837246..2837860(+) (dinR/lexA) [Pseudomonas aeruginosa strain PAC1]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=393536 HPT09_RS13020 WP_003091196.1 2837246..2837860(+) (dinR/lexA) [Pseudomonas aeruginosa strain PAC1]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGTATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387