Detailed information NTG0393534

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: FIV02_RS08180
• Genome accession: NZ_CP045349
• Coordinates: 1750729..1752954 (+)
• Length: 741 a.a.
• NCBI ID: WP_256663103.1
• Uniprot ID: -
• Organism: Pseudomonas sp. THAF187a
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1745729..1757954

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FIV02_RS08155 (FIV02_08080)	lolD	1746550..1747236 (+)	687	WP_371923236.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
FIV02_RS08160 (FIV02_08085)	-	1747236..1748480 (+)	1245	WP_047589828.1	lipoprotein-releasing ABC transporter permease subunit	-
FIV02_RS08165 (FIV02_08090)	-	1748487..1749095 (-)	609	WP_152488324.1	LysE family translocator	-
FIV02_RS08170 (FIV02_08095)	-	1749228..1750037 (-)	810	WP_152488325.1	AraC family transcriptional regulator	-
FIV02_RS08175 (FIV02_08100)	-	1750078..1750602 (-)	525	WP_047589826.1	DUF2062 domain-containing protein	-
FIV02_RS08180 (FIV02_08105)	comA	1750729..1752954 (+)	2226	WP_256663103.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
FIV02_RS08185 (FIV02_08110)	exbB	1753027..1753659 (+)	633	WP_037048580.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
FIV02_RS08190 (FIV02_08115)	-	1753656..1754084 (+)	429	WP_152488326.1	biopolymer transporter ExbD	-
FIV02_RS08195 (FIV02_08120)	lpxK	1754085..1755089 (+)	1005	WP_152488327.1	tetraacyldisaccharide 4'-kinase	-
FIV02_RS08200 (FIV02_08125)	-	1755110..1755295 (+)	186	WP_003245207.1	Trm112 family protein	-
FIV02_RS08205 (FIV02_08130)	kdsB	1755296..1756060 (+)	765	WP_152488328.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
FIV02_RS08210 (FIV02_08135)	-	1756060..1756524 (+)	465	WP_152488329.1	low molecular weight protein-tyrosine-phosphatase	-
FIV02_RS08215 (FIV02_08140)	murB	1756521..1757540 (+)	1020	WP_152488330.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 79682.68 Da
• Isoelectric Point: 10.2867

>NTDB_id=393534 FIV02_RS08180 WP_256663103.1 1750729..1752954(+) (comA) [Pseudomonas sp. THAF187a]
MRTGMLALALGLLALRFLPGLPSAGMLLLMAACALALLFSRGYPLGFFLLGLAWACCSAQWALDDRLGVALDGRTLWLEG
QVVGLPEAADGVLRFQLQDARSRRAELPARMRLAWYGGPPVLAGERWRLAVNLKRPHGLVNPQRFDYEAWLLAQRIGATG
TIKSGERLAPATGLGSWRDALRQRLLAVPAWGRQGGIAALVLGDGSGLTAEDWRLLQHTGTVHLMVISGQHIALLSGFLY
GLVALLARLGVWPQRLPWLPCACALALGGALIYGLLAGFEVPVRRACVMVALVLLWRLRFRHLGAAWPLLAALLVVLLLE
PLASLQPGFWLSFSAVAVLALAFAGRLGTWGWWRGLTRAQWTTAIGLLPMMLILGLPVSSSGPLANLLAVPWVGLVVVPL
ALFGTLLLPVPLLGEGLLWLAGGALQLLFALLGLIAGWLPAWLPSELPWWVWSLAALGAALLLLPAGVPLRLPGLALLLP
ALLVSAQGPEDGQADVWVLDVGQGLSVLVRTREHSLLYDAGPRFGDFDSGERIVLPSLRALNLRRLDLLLVSHADNDHAG
GATAVAAGMPVARVISGEPARLARSLAAEACESGRSWQWDGVTFRLWQWPQAAPGNPRSCVLQVEAEGERLLLTGDIDAA
AEQALVQSGFPLASHWLLAPHHGSRSSSSQRFIDAVGPQHVLITRSRHNAFGHPHPQVLARYQAAGVAVHDTAYAGALHL
RLGKWLAPRGLRSEARFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=393534 FIV02_RS08180 WP_256663103.1 1750729..1752954(+) (comA) [Pseudomonas sp. THAF187a]
ATGCGTACAGGGATGTTGGCGCTGGCCCTGGGTTTGCTGGCGTTGCGCTTTCTGCCGGGCCTGCCGTCCGCCGGGATGCT
GCTGCTCATGGCCGCTTGCGCGCTCGCGCTGCTGTTCTCGCGGGGCTATCCCCTGGGCTTCTTCCTGCTGGGGCTGGCCT
GGGCCTGCTGCTCCGCGCAATGGGCACTGGATGATCGCCTGGGCGTGGCGCTGGATGGGCGCACCCTGTGGCTGGAAGGG
CAGGTGGTCGGCTTGCCGGAAGCGGCCGACGGTGTGCTTCGCTTCCAGTTGCAGGACGCCCGTTCACGGCGTGCCGAACT
GCCCGCCAGGATGCGCCTGGCCTGGTATGGCGGGCCACCGGTGCTGGCTGGCGAGCGTTGGCGTCTGGCAGTCAATCTCA
AGCGTCCCCATGGCCTGGTCAATCCGCAGCGTTTCGATTACGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGG
ACGATCAAGTCGGGGGAGCGCCTGGCCCCGGCCACTGGCCTGGGCAGCTGGCGCGACGCCCTGCGCCAGCGCCTGCTGGC
GGTGCCCGCCTGGGGACGGCAGGGCGGCATTGCCGCACTGGTGCTCGGCGATGGCTCCGGCCTGACGGCGGAGGACTGGC
GTCTGTTGCAGCACACCGGCACCGTCCACCTGATGGTTATCTCCGGGCAGCACATCGCCCTGCTGTCCGGTTTCCTCTAT
GGACTGGTGGCGCTGCTGGCCAGGCTCGGGGTTTGGCCGCAGCGCCTGCCGTGGTTGCCTTGCGCCTGCGCGCTGGCCTT
GGGCGGCGCGCTGATCTATGGCCTGCTGGCCGGGTTCGAGGTGCCGGTGCGCAGGGCCTGCGTGATGGTTGCCCTGGTGC
TGTTGTGGCGCCTGCGCTTTCGTCACCTGGGCGCTGCCTGGCCGCTGTTGGCGGCTCTGCTGGTGGTGCTGTTGCTGGAG
CCGCTGGCGTCCCTGCAGCCGGGCTTCTGGCTGTCGTTCTCGGCGGTCGCCGTGCTTGCGCTGGCCTTTGCCGGGCGGCT
GGGTACCTGGGGCTGGTGGCGCGGGCTGACACGTGCGCAATGGACTACGGCGATCGGCCTGTTGCCGATGATGTTGATCC
TCGGGCTGCCGGTCAGCAGCAGCGGGCCCCTGGCCAATCTGCTCGCCGTGCCCTGGGTAGGGCTGGTGGTGGTGCCGCTG
GCGCTGTTCGGTACGCTGCTGTTGCCGGTGCCTCTGCTCGGCGAGGGCTTGCTGTGGCTGGCCGGCGGGGCATTGCAGCT
GCTCTTCGCGCTGCTCGGCCTGATCGCCGGCTGGTTGCCCGCCTGGTTGCCCAGCGAGTTGCCGTGGTGGGTCTGGTCGT
TGGCGGCGCTGGGGGCCGCGTTGCTGTTGCTGCCTGCCGGTGTGCCACTGCGCTTGCCGGGGCTGGCGCTGCTGCTGCCC
GCGCTGCTGGTATCGGCGCAAGGGCCCGAGGACGGGCAGGCCGACGTCTGGGTCCTGGATGTCGGCCAGGGCTTGTCGGT
TCTGGTGCGGACCCGCGAGCACAGCCTGCTGTACGACGCCGGGCCGCGCTTCGGCGACTTCGACAGCGGCGAACGTATCG
TCCTGCCGTCGCTGCGTGCGCTGAACCTCCGGCGGCTCGACCTGTTGCTGGTCAGCCACGCCGACAACGATCATGCTGGT
GGGGCGACGGCCGTGGCGGCTGGCATGCCGGTGGCGCGGGTCATCAGTGGCGAGCCGGCGCGTCTCGCGCGAAGCCTGGC
TGCCGAGGCCTGCGAGTCCGGGCGCAGCTGGCAGTGGGATGGCGTGACCTTCAGGTTGTGGCAATGGCCGCAGGCGGCGC
CAGGCAACCCGCGTTCCTGCGTCTTGCAGGTGGAGGCTGAGGGGGAGCGCTTGCTGTTGACCGGCGACATCGATGCGGCG
GCCGAACAGGCGCTGGTGCAATCGGGCTTCCCGCTGGCGTCGCACTGGCTGCTGGCTCCGCATCACGGCAGCCGCAGTTC
CTCCAGCCAGCGCTTCATCGACGCGGTCGGGCCGCAGCACGTGCTGATCACGCGCAGCCGGCACAATGCCTTCGGCCATC
CGCACCCGCAGGTGCTGGCGCGTTACCAGGCGGCGGGCGTGGCGGTGCATGACACCGCGTATGCCGGTGCGCTGCATCTG
CGCCTGGGCAAGTGGCTCGCACCGCGCGGGTTGCGAAGCGAGGCACGCTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-464)

• Domain of unknown function (DUF4131) (DUF4131) (24-167)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-678)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.083	97.166	0.652
comA	Ralstonia pseudosolanacearum GMI1000	36.613	100	0.397