Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FIV04_RS12295 Genome accession   NZ_CP045338
Coordinates   2767481..2767999 (-) Length   172 a.a.
NCBI ID   WP_032549766.1    Uniprot ID   A0A066URM7
Organism   Vibrio sp. THAF190c     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2762481..2772999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV04_RS12275 (FIV04_12320) rpsP 2763056..2763304 (-) 249 WP_004410028.1 30S ribosomal protein S16 -
  FIV04_RS12280 (FIV04_12325) ffh 2763567..2764958 (-) 1392 WP_032549761.1 signal recognition particle protein -
  FIV04_RS12285 (FIV04_12330) - 2765159..2765953 (+) 795 WP_032549763.1 inner membrane protein YpjD -
  FIV04_RS12290 (FIV04_12335) - 2766080..2767369 (+) 1290 WP_032549765.1 HlyC/CorC family transporter -
  FIV04_RS12295 (FIV04_12340) luxS 2767481..2767999 (-) 519 WP_032549766.1 S-ribosylhomocysteine lyase Regulator
  FIV04_RS12300 (FIV04_12345) - 2768023..2768604 (-) 582 WP_152469568.1 hypothetical protein -
  FIV04_RS12305 (FIV04_12350) gshA 2768675..2770243 (-) 1569 WP_032549769.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18959.78 Da        Isoelectric Point: 4.7373

>NTDB_id=393496 FIV04_RS12295 WP_032549766.1 2767481..2767999(-) (luxS) [Vibrio sp. THAF190c]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRAHLNGEQVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMADVLKVESQNKIPELNEYQCGTAAMHSLEEAKEIAKAILDAGISVNKNDELA
LPESMLKELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=393496 FIV04_RS12295 WP_032549766.1 2767481..2767999(-) (luxS) [Vibrio sp. THAF190c]
ATGCCTTTATTAGATAGTTTTACTGTGGATCACACACGCATGAATGCACCTGCAGTACGTGTGGCAAAAACGATGCAGAC
TCCTAAGGGAGATACGATCACAGTATTCGATTTACGTTTTACTGCACCCAATAAAGATATCCTGTCAGAGAAAGGAATTC
ACACTCTTGAGCACCTTTACGCTGGCTTTATGCGTGCGCACCTAAATGGCGAGCAAGTTGAAATCATCGATATCTCACCA
ATGGGTTGTCGTACGGGTTTCTACATGAGCCTGATTGGTACACCTTCAGAGCAGCAAGTCGCTGATGCTTGGTTAGCAGC
AATGGCTGACGTGCTGAAAGTTGAGAGTCAAAACAAGATTCCTGAGCTGAATGAATACCAGTGTGGCACAGCAGCGATGC
ACTCTCTAGAAGAAGCAAAAGAGATTGCTAAGGCTATTTTAGATGCTGGTATCTCAGTGAATAAGAATGATGAGCTGGCA
CTACCAGAATCTATGCTTAAAGAGCTGAAGGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066URM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

90.058

99.419

0.895

Multiple sequence alignment