Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPT10_RS23570 Genome accession   NZ_CP053705
Coordinates   5089785..5091227 (-) Length   480 a.a.
NCBI ID   WP_003141219.1    Uniprot ID   A0A0H2ZGF7
Organism   Pseudomonas aeruginosa strain PAC6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5084785..5096227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPT10_RS23540 (HPT10_23565) - 5085111..5086226 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  HPT10_RS23545 (HPT10_23570) - 5086219..5086980 (+) 762 WP_171888681.1 DUF2334 domain-containing protein -
  HPT10_RS23550 (HPT10_23575) - 5086977..5087978 (+) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  HPT10_RS23555 (HPT10_23580) - 5087953..5088165 (-) 213 WP_023092831.1 hypothetical protein -
  HPT10_RS23560 (HPT10_23585) purU 5088215..5089066 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  HPT10_RS23565 (HPT10_23590) mvaT 5089326..5089700 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  HPT10_RS23570 (HPT10_23595) sbcB 5089785..5091227 (-) 1443 WP_003141219.1 exodeoxyribonuclease I Machinery gene
  HPT10_RS23575 (HPT10_23600) - 5091452..5092189 (+) 738 WP_019681895.1 hypothetical protein -
  HPT10_RS23580 (HPT10_23605) - 5092227..5093024 (+) 798 WP_019681896.1 RDD family protein -
  HPT10_RS23585 (HPT10_23610) - 5093021..5094001 (+) 981 WP_023098026.1 stage II sporulation protein M -
  HPT10_RS23590 (HPT10_23615) - 5093988..5095559 (+) 1572 WP_128528650.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55477.76 Da        Isoelectric Point: 5.5542

>NTDB_id=393469 HPT10_RS23570 WP_003141219.1 5089785..5091227(-) (sbcB) [Pseudomonas aeruginosa strain PAC6]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRGEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=393469 HPT10_RS23570 WP_003141219.1 5089785..5091227(-) (sbcB) [Pseudomonas aeruginosa strain PAC6]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGGCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438