Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ALIDE_RS18040 Genome accession   NC_014910
Coordinates   3780644..3781048 (-) Length   134 a.a.
NCBI ID   WP_013520430.1    Uniprot ID   A0A420KBZ9
Organism   Alicycliphilus denitrificans BC     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3775644..3786048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALIDE_RS18025 (Alide_3630) - 3777450..3779714 (-) 2265 WP_013520427.1 methyl-accepting chemotaxis protein -
  ALIDE_RS18030 (Alide_3631) - 3779735..3780262 (-) 528 WP_013520428.1 chemotaxis protein CheW -
  ALIDE_RS18035 (Alide_3632) - 3780279..3780644 (-) 366 WP_013520429.1 response regulator -
  ALIDE_RS18040 (Alide_3633) pilG 3780644..3781048 (-) 405 WP_013520430.1 response regulator Regulator
  ALIDE_RS23600 (Alide_3634) - 3781100..3781273 (-) 174 WP_081462186.1 rubredoxin -
  ALIDE_RS18045 (Alide_3635) thiD 3781413..3782315 (+) 903 WP_013520432.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ALIDE_RS18050 (Alide_3636) hemL 3782299..3783603 (+) 1305 WP_013520433.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ALIDE_RS18055 (Alide_3637) purH 3783705..3785309 (-) 1605 WP_174764565.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  ALIDE_RS18060 (Alide_3638) - 3785385..3785621 (-) 237 WP_013520435.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14827.06 Da        Isoelectric Point: 7.7124

>NTDB_id=39346 ALIDE_RS18040 WP_013520430.1 3780644..3781048(-) (pilG) [Alicycliphilus denitrificans BC]
MATTTTGSTFKVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALAKVNDYRPQLIFCDILMPKLDGYQTCAIIKRNAR
FADTPVVMLSSKDGVFDKARGRMVGCQEYLTKPFTKDQLLQAVQQFGNAQQGAM

Nucleotide


Download         Length: 405 bp        

>NTDB_id=39346 ALIDE_RS18040 WP_013520430.1 3780644..3781048(-) (pilG) [Alicycliphilus denitrificans BC]
TTGGCTACGACGACAACCGGTTCCACCTTCAAGGTCCTCGTGGTGGACGATAGCAACACCATCCGGCGCAGCGCCGAGAT
CTTCCTCAAGCAGGGCGGCCACGAGGTGCTGCTCGCGGACGACGGCTTTGACGCCCTGGCCAAGGTCAACGATTACCGGC
CCCAGCTGATCTTCTGCGACATCCTGATGCCCAAGCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCCCGT
TTCGCCGATACGCCGGTGGTCATGCTGTCGTCCAAGGACGGCGTCTTCGACAAGGCGCGCGGCCGCATGGTCGGCTGCCA
GGAATACCTCACCAAGCCATTCACCAAAGACCAGTTGCTGCAGGCCGTGCAGCAATTCGGAAATGCGCAACAAGGAGCCA
TGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A420KBZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.265

87.313

0.5

Multiple sequence alignment